SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16603

Length: 1244 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16603

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	50S ribosomal protein L6, putative; K02933 large subunit ribosomal protein L6	-	-	7.0e-37	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	ribosomal protein l6	-	-	5.60519e-45	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	5.60519e-45	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	translation	GO:0006412	Biological Process	5.60519e-45	86%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	5.60519e-45	86%
Blast2go	rRNA binding	GO:0019843	Molecular Function	5.60519e-45	86%
Blast2go	large ribosomal subunit	GO:0015934	Cellular Component	5.60519e-45	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	5.60519e-45	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L6	IPR000702	-	5.60519e-45	86%
Blast2go	Ribosomal protein L6, conserved site	IPR002358	-	5.60519e-45	86%
Blast2go	Ribosomal protein L6, bacterial-type	IPR019906	-	5.60519e-45	86%
Blast2go	Ribosomal protein L6, alpha-beta domain	IPR020040	-	5.60519e-45	86%

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
367	76		23		1.0
398		76		23	1.0
644			10	90	0.90298
648	10		90		0.90298
649	80	20			0.999996
650	90			10	0.90298
652	90			10	0.90298
653			10	90	0.90298
654	10	90			0.90298
657			10	90	0.90298
658	10		90		0.90298
659		10	90		0.90298
663		10		90	0.90298
664		11	88		0.923564
666		11		88	0.923564
667			11	88	0.923564
670	88			11	0.923564
671	88		11		0.923564
673		12	87		0.992554
675	87			12	0.992554
681	90			10	0.999898
685		10	89		0.999919
729		8	91		0.999807
735	91	8			0.999807
739		91		8	0.999807
740	91		8		0.999807
741	91		8		0.999807
742		8	91		0.999807
745		91		8	0.999766
1035	87		12		0.992554
1195	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain