SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16599

Length: 843 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16599

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RRM_1 domain containing protein	-	-	5.0e-08	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	rna binding protein	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	78%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	78%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	78%

Full-Lengther Next Prediction

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
33	16			83	0.994512
36	16	83			0.994512
104			85	14	0.993533
107		85	14		0.993533
108	85		14		0.993533
109	85			14	0.993533
110	85	14			0.993533
111	85			14	0.993533
127		14		85	0.993533
145		14		85	0.999981
146			14	85	0.999981
149		92	7		0.999602
150			92	7	0.999602
151		92	7		0.999602
153	92	7			0.999602
155		95		4	0.995055
156		93	4	2	0.973796
158	93	4			0.976545
161		95		4	0.995482
162	93	6			0.999998
164		4	95		0.995482
175	76			23	1.0
265	94	5			0.998578
468			90	10	0.90298
471		10	90		0.90298
472	90	10			0.90298
473			90	10	0.90298
474		96		3	0.991164
475		96	3		0.991164
476	96		3		0.991164
478	96			3	0.991164
480			94	3	0.947029
484	96	3			0.991164
485			96	3	0.991164
610	21		78		1.0
724		12	87		1.0
775	87		12		0.992554
794		40	60		1.0
804			50	50	1.0
823		50		50	1.0
832		66	33		0.997452
833	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain