SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16597

Length: 1408 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16597

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tetratricopeptide-like helical	IPR011990	-	0.0	72%
Blast2go	Tetratricopeptide repeat 11 Fission 1 protein	IPR016543	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU90

Fln msg:

Fln protein: MAKNINSIMDSIGSFFGSGDNLPWTDADIIANCEREFVGEGDGLSKGTGNTESIMRLSWALVHSRRPPDVQRGIAMLEAALDRDGGPLQRREILYLLAVGHYRAEDYPRSRLCLDQALQIAPDFRQALSLRKVLEEKITKDGVIGIGIAVTAVGLVAGGIAAALSRKK*

Protein Length: 170

Fln nts: ATGGGGGAGCTTTTCGAAACCGTTTCCATTTCTTAGCCTCCAAGTTACTTTCATTTGTCATTCTTTTGGTTGCCATTGACATATTTCATAGACAGGTAATTTGGGTTCGCTCGCGAAGGCATC_-_ATGGCTAAAAACATCAACAGCATTATGGATTCCATTGGATCGTTCTTCGGATCGGGTGATAACCTGCCGTGGACAGATGCGGACATTATCGCTAACTGTGAGCGTGAATTTGTTGGAGAAGGAGATGGTCTTTCAAAAGGTACAGGTAACACTGAGAGCATAATGAGGTTATCATGGGCGCTGGTACATTCACGACGTCCTCCAGATGTTCAAAGAGGGATAGCAATGTTGGAAGCTGCCTTAGACAGAGATGGTGGCCCTTTGCAGAGAAGGGAGATACTTTATCTTCTTGCAGTAGGTCACTACAGGGCAGAAGATTATCCAAGGAGCAGACTGTGTTTAGACCAAGCATTACAGATAGCTCCAGACTTCAGGCAAGCATTGTCACTGAGGAAAGTACTTGAAGAGAAAATTACAAAAGATGGTGTGATTGGCATAGGTATTGCGGTCACTGCAGTAGGATTAGTTGCTGGTGGGATTGCAGCGGCTTTGTCACGGAAGAAATGA___TATATGAAGCGATAACTGCAACCTGTGTGAATACTGAACTTTTAATAAGCTGTGTGGAACAAAACAATTTGATGTCTCGAGGATCCTGCTTACCTTCAGTTGGCCTGCCCACACAATGTGCATCTTACTAAGGTCTAAGGACAATAAATTGCTCTTTTCTGTTTGCATATTAGTCAGATATGATATGAAACTCAAAGCTGTTGGTCTATTAATTGATTTTATAGCAGTCGATAAATATATGAAATTCTCATATGATTGAACAGGATGTGATGAGTTCACCCTCTAGCAGATATAGAGTAAGTTGCTCATTCATAATTCAGATCCTAATAAGGCCTACAAGAGATTGTCTCAAGCTTCTTCCAATTATACCTGTCTGGCAGGGGTATATGCAGTGCTCACCTCATCTTGGTATTGATTACACTCTTGAAATACCCATATTTACTTCTAGTTCTATATCCGAGGTATTTCGTTCCATTTATCATGCTGTAAATATAATTTGTTCCATTCCAAATGCAGTTATGTATACTTCTGTGATTGCCTCAAGTCACTGAATTTGGAGTTTTGTTTTATCCTCTCTTCTATCGGAGAAATGTTAAGCCTTCTCGGCTTGTGTTGTTTTAGCATTTTATGTACACATGGATTAATACGTTTTGTTTGTAGAGGTCACGACTCCTTTTTGTCTAATTGAGGTATGTTGCTCTACAATTAATACTCATTTCGTGTGATTAATCTGCATACAGCTGTGGCAGAGTTTAATATTTCAAACGAATATGTTTAA

Fln Alignment:

sp_v1.1_unigene16597___MAKNINSIMDSIGSFFGSGDNLPWTDADIIANCEREFVGEGDGLSKGTGNTESIMRLSWALVHSRRPPDVQRGIAMLEAALDRDGGPLQRREILYLLAVGHYRAEDYPRSRLCLDQALQIAPDFRQALSLRKVLEEKITKDXXXXXXXXXXXXXXXXXXXXXXLSRKK
A9NU90_______________MSRNVNSFLDSIGSFFGSGDNLPWTDADIIANCEREAVGEGAGLSKGTDNSDSIMRLSWALVHSRRSADVQRGIAMLEAALDRDGGPLQKREILYLLAVGHYRAEDYPRSRQFIDQALQIAPDFRQALALRKALEEKITKDGVIGIGIAVTAVGLVAGGIAAALSRKK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
630	87		12		0.992554
631			12	87	0.992554
679	10		90		0.90298
771	95		4		0.997494
1057	93			4	0.985381
1082		5		94	0.998894
1278	16		83		0.994512
1297		83		16	0.994512
1310			20	80	0.995493
1343			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain