SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16596

Length: 1182 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16596

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubulin folding cofactor A n=5 Tax=Poaceae RepID=A5CFZ2_HORVD	-	-	1.0e-36	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	tcp1-chaperonin cofactor a isolog	-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	84%
Blast2go	cytokinesis	GO:0000910	Biological Process	84%
Blast2go	tubulin complex assembly	GO:0007021	Biological Process	84%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	84%
Blast2go	microtubule	GO:0005874	Cellular Component	84%

Full-Lengther Next Prediction

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
169	66		33		0.997452
170		66	33		0.997452
171			33	66	0.997452
180		33		66	0.997452
229		66		33	0.997452
232			66	33	0.997452
236		33		66	0.997452
319	83		16		0.994512
321	83		16		0.994512
356	16			83	0.994512
358		83	16		0.994512
359	83		16		0.994512
360			16	83	0.994512
379			75	25	1.0
382	75		12		0.975346
383	87		12		0.992554
486		80		20	0.999996
565	88	11			0.923564
575	88		11		0.923564
624		14		85	0.993533
661	33		66		1.0
676	16		83		0.994512
677		83	16		0.994512
680			16	83	0.994512
684	75			25	0.996473
686			25	75	0.996473
693		16		83	0.994512
705		16	83		0.994512
726		83		16	0.994512
730	83		16		0.994512
732	83		16		0.994512
737	16		83		0.994512
776	83		16		0.994512
784		16		83	0.994512
791			83	16	0.994512
809			12	87	0.992554
820		85	14		0.993533
838		85		14	0.993533
848	10		90		0.90298
849		90		10	0.90298
853	90		10		0.90298
854	90	10			0.90298
862		11		88	0.923564
864	11	88			0.923564
877		12		87	0.992554
882			87	12	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain