SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16593

Length: 1453 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16593 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RNK3_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	pyruvate dehydrogenase e1 alpha subunit	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pyruvate dehydrogenase (acetyl-transferring).	EC:1.2.4.1	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	84%
Blast2go	Citrate cycle (TCA cycle)	00020	84%
Blast2go	Valine, leucine and isoleucine biosynthesis	00290	84%
Blast2go	Pyruvate metabolism	00620	84%
Blast2go	Butanoate metabolism	00650	84%
Blast2go	Biosynthesis of phenylpropanoids	01061	84%
Blast2go	Biosynthesis of terpenoids and steroids	01062	84%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	84%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	84%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	84%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	glycolysis	GO:0006096	Biological Process	84%
Blast2go	pyruvate dehydrogenase (acetyl-transferring) activity	GO:0004739	Molecular Function	84%
Blast2go	plastid	GO:0009536	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Dehydrogenase, E1 component	IPR001017	-	0.0	84%
Blast2go	Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y	IPR017597	-	0.0	84%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRC3

Fln msg: Distance to subject end: 23 aas,

Fln protein: MTTMSTARIPPVSSPGIALKPKAFSSTGKLPRVCAKPGWLRKDSMGLNLRRSEFRSAKLTRSPLTVSAIASASELVKESIDTKSDLLVTREEGLVLYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKMLEAHDSVCSTYRDHVHALSKGVSARAVMSELFGKTTGCCRGQGGSMHMFSKEHGMLGGFAFIGEGIPVALGAAFSSKYKQEVLKDEKANGVTVAFFGDGTCNNGQFFECLNMAALWKLPIIFVVENNLWAIGMSHIRATSVPDIWEKGPAFGMPGVHVDGMDVLKVREVAKEAVARARRGDGPTLVECETYRFRGHSLADPDELRDPAEKAHYAARDPIVSLKKYLN*L*ICFSSKIILYEVFLATETDLKSIEKKIDEIIEEAVEFADASPLPERGQLLENVFADPK

Protein Length: 428

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCAACTCTCGGCGTGACAAGCACTGGAAAAGTAGTTGAACAGCCTCAACTCAACTCCACCGCTGTTCTTTATCAACTCATCACTCCTCCCTTATTATTACAGTGCCCGCAGAGAAATTCTTACAAAC_-_ATGACGACCATGTCGACAGCTCGAATACCGCCCGTATCTTCTCCCGGCATTGCTCTGAAACCCAAAGCCTTCTCCAGTACAGGCAAGCTTCCGCGGGTTTGTGCGAAGCCTGGATGGCTCAGAAAGGATTCAATGGGCTTGAACCTCAGACGTTCGGAATTCAGATCGGCGAAATTGACACGTTCACCATTGACAGTGTCTGCAATCGCATCGGCTTCAGAGCTTGTGAAGGAGAGCATTGATACAAAATCAGACCTGCTTGTCACCCGGGAGGAGGGCTTGGTCTTATATGAAGATATGGTTCTGGGCAGATCTTTTGAAGATATGTGCGCTCAGATGTATTACCGGGGAAAAATGTTTGGGTTTGTGCATCTCTACAATGGGCAGGAAGCTGTTTCAACTGGGTTTATTAAGATGCTGGAGGCTCATGATTCCGTCTGTAGCACTTACAGAGATCACGTGCATGCACTTAGCAAGGGAGTGTCTGCCCGAGCTGTGATGAGTGAACTCTTTGGTAAGACTACTGGCTGTTGCAGAGGGCAAGGAGGCTCCATGCACATGTTTTCTAAGGAGCATGGCATGCTGGGGGGTTTTGCCTTCATTGGAGAAGGGATTCCTGTTGCTCTAGGAGCTGCTTTCAGTAGCAAATATAAGCAAGAAGTGCTGAAGGATGAAAAGGCAAATGGAGTTACAGTTGCATTCTTTGGAGATGGGACATGCAACAATGGGCAGTTCTTCGAATGCCTGAACATGGCTGCCCTTTGGAAGCTTCCAATTATTTTTGTTGTTGAGAACAATTTGTGGGCTATTGGAATGTCCCACATCAGGGCGACTTCAGTTCCCGATATTTGGGAGAAAGGGCCTGCATTTGGCATGCCGGGTGTGCATGTTGATGGCATGGATGTGTTGAAGGTTAGAGAAGTGGCTAAGGAGGCTGTGGCCAGAGCAAGGAGGGGCGATGGGCCGACTCTTGTTGAATGTGAAACATATAGATTCAGAGGTCATTCTTTGGCTGACCCTGATGAACTTCGAGACCCAGCGGAAAAGGCTCACTATGCAGCAAGGGATCCGATAGTGTCTTTGAAGAAATACCTCAATTGACTTTAGATCTGTTTCAGTAGCAAGATTATTCTCTATGAGGTATTTCTTGCTACTGAAACAGATCTAAAGTCAATTGAAAAGAAAATTGATGAGATTATTGAAGAGGCCGTGGAATTTGCAGATGCAAGCCCTCTGCCAGAGCGTGGTCAGCTTCTTGAGAATGTATTTGCAGATCCTAAAGG

Fln Alignment:

sp_v1.1_unigene16593___MTTMSTARIPPVSSPGIALKPKAFSSTGKLPRVCAKPGWLRKDSMGLNLRRSEFRSAKLTRSPLTVSAIASASELVKESIDTKSDLLVTREEGLVLYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKMLEAHDSVCSTYRDHVHALSKGVSARAVMSELFGKTTGCCRGQGGSMHMFSKEHGMLGGFAFIGEGIPVALGAAFSSKYKQEVLKDEKANGVTVAFFGDGTCNNGQFFECLNMAALWKLPIIFVVENNLWAIGMSHIRATSVPDIWEKGPAFGMPGVHVDGMDXXXXXXXXXXXXXXXXRGDGPTLVECETYRFRGHSLADPDELRDPAEKAHYAARDPIVSLKKYLN*L*ICFSSKIILYEVFLATETDLKSXXXXXXXXXXEAVEFADASPLPERGQLLENVFADPK
B8LRC3_______________MTTMSTARIPPASSPCIARKPKASSNTGKLPRVYVKPGWLRKDLMGSNLRFSEFRSAKLPCSPLTVSAIASASELVKERIETKSELLVTREEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKMLKAHDSVCSTYRDHVHALSKGVPARAVMSELFGKTTGCCRGQGGSMHMFSKEHGVLGGFAFIGEGIPVALGAAFSSKYKQEVLKDEKANAVTVAFFGDGTCNNGQFFESLNMAALWKLPIIFVVENNLWAIGMSHIRATSVPDIWEKGPAFGMPGVHVDGMDVLKVREVAKEAVARARRGDGPTLVECETYRFRGHSLADPDELRNPAEKAHYAARDPIVSLKKY-------------LIENNLANESDLKSIEKKIDEIIEEAVEFADASPLPQRGQLLENVFADPK

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
1036	53		46		1.0
1105	36		63		1.0
1160		71		28	1.0
1240	7	92			0.999664
1313		4	87		0.999414
1316	60	4	34		1.0
1318			34	4	1.0
1320	59		40		1.0
1322		36		63	1.0
1326		40	54	4	1.0
1327		40	59		1.0
1329	40	4	50	4	1.0
1332	18		81		1.0
1333			18	81	1.0
1334		45	40	13	1.0
1335	77	4	13		1.0
1336	18	45		36	1.0
1337	9		77	13	1.0
1338	77		22		1.0
1339	13	45	4		1.0
1341	10			90	0.90298
1342	10			90	0.90298
1344	90		10		0.90298
1346	90	10			0.90298
1348	90	10			0.90298
1350	90			10	0.90298
1351	90	10			0.90298
1352		80	20		0.999996
1353	87			12	0.992554
1356	12		87		0.992554
1358		12		87	0.992554
1359		12	87		0.992554
1360	12		87		0.992554
1363			12	87	0.992554
1365		12	87		0.992554
1368	12			87	0.992554
1369		12		87	0.992554
1373			85	14	0.993533
1374		85	14		0.993533
1375	14			85	0.993533
1378			14	85	0.993533
1381	85		14		0.993533
1383		14		85	0.993533
1385	14	85			0.993533
1386			14	85	0.993533
1387			14	85	0.993533
1389		14		85	0.993533
1390	14	85			0.993533
1392	85		14		0.993533
1393	14		85		0.993533
1394		14		85	0.993533
1417			66	33	1.0
1418	33			66	1.0
1421		66	33		1.0
1425		66		33	1.0
1426	66		33		1.0
1427	66	33			1.0
1428	16		83		0.994512
1430		33		66	1.0
1431		66	33		1.0
1432	66			33	1.0
1433		66	33		1.0
1436		66		33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain