SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16575

Length: 1059 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16575

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycine dehydrogenase [decarboxylating], mitochondrial n=1 Tax=Solanum tuberosum RepID=GCSP_SOLTU	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	p- protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glycine dehydrogenase (decarboxylating).	EC:1.4.4.2	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycine, serine and threonine metabolism	00260		0.0	78%
Blast2go	Metabolic pathways	01100		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	78%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	78%
Blast2go	glycine decarboxylation via glycine cleavage system	GO:0019464	Biological Process	78%
Blast2go	glycine dehydrogenase (decarboxylating) activity	GO:0004375	Molecular Function	78%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%
Blast2go	apoplast	GO:0048046	Cellular Component	78%
Blast2go	glycine cleavage complex	GO:0005960	Cellular Component	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	78%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	78%
Blast2go	Glycine cleavage system P-protein, N-terminal	IPR020580	-	78%
Blast2go	Glycine cleavage system P protein	IPR020581	-	78%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
726		86		13	0.999973
842		6		93	0.999264

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain