SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16572

Length: 1296 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16572

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	small multi-drug export protein	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	transport protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	79%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Putative small multi-drug export	IPR009577	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADT6

Fln msg:

Fln protein: MAMAFAAIAPCASRTTTKLYSRSLQLTSRPQTLHNLGLNRGPGPWVPNLHLTRPANKVWMTIRRAMDKDLESPGPSSSEQGFQTLQRILQWSIIKTCALFSTSLVISAMLFCNSAFASQESIKASQIGLKIASFMRRTGWPDELIVFVLATLPILELRGAIPVGYWMQLEPLKVSILAVVGNMVPVPFILLYLKQLVNYAGKRSSVASRFLDRLIEITRKKAGPIEEFQWLGLMLFVAVPFPGTGAWSGAIAATILDMPFWQAVSANFFGVVFAGLLVNLLVNLGIKYAVIVGAILFFVSTVMWSFLRYVRKPPNNLN*

Protein Length: 320

Fln nts: ATGGGGGACCGAGCCATTGAATGACACCCGCTGTTCCCATTAGATGACGTGGCACTTCGGTTTGAGTACCGCCGGGACTCGAGAGACTATGACGCCCCGCTCATGTTTAAGGACTTCAGGGATCTAGGAAGAAGCAGGGAGCAAAGGGGTGAAAGGGCTATACATTCTGAATATTCGTGTTCGTCATAACA_-_ATGGCAATGGCGTTTGCAGCGATCGCACCCTGTGCTTCCCGTACAACAACAAAGCTGTACTCGAGATCTCTTCAATTAACTTCTCGGCCCCAGACTCTCCACAATCTTGGACTTAACAGAGGTCCGGGCCCATGGGTCCCGAATCTGCATCTCACAAGGCCCGCTAACAAGGTTTGGATGACAATCCGGAGGGCCATGGATAAAGACTTGGAGAGCCCAGGCCCCTCCAGCTCGGAGCAGGGTTTTCAGACTCTCCAGCGAATATTGCAATGGAGTATTATAAAGACATGTGCATTATTCTCGACTTCTTTGGTGATTTCGGCTATGCTGTTTTGTAACAGTGCGTTTGCGAGTCAAGAGTCCATCAAGGCTTCGCAGATTGGCTTGAAGATTGCGAGTTTTATGAGGAGAACTGGGTGGCCTGACGAGCTCATAGTCTTCGTGTTGGCTACACTTCCAATTCTGGAGCTCAGAGGGGCGATTCCTGTAGGTTACTGGATGCAGTTAGAACCCTTGAAGGTCTCCATATTGGCTGTTGTGGGAAACATGGTACCTGTACCATTTATTTTACTCTATTTGAAACAGCTTGTGAATTATGCGGGAAAGAGGAGTTCAGTTGCTTCCAGGTTTCTGGATAGGCTGATTGAAATAACAAGGAAGAAAGCAGGCCCTATAGAGGAGTTCCAATGGCTTGGATTGATGTTGTTTGTTGCCGTTCCCTTCCCAGGGACTGGGGCATGGTCTGGAGCCATTGCAGCCACAATACTGGATATGCCTTTTTGGCAGGCTGTTTCGGCCAATTTCTTTGGAGTGGTGTTTGCAGGGCTGCTAGTGAATTTACTGGTTAATCTTGGCATCAAATATGCTGTTATTGTTGGAGCCATTTTATTTTTCGTGTCAACTGTCATGTGGAGCTTTCTTAGATATGTCAGAAAACCACCAAACAATTTAAACTGA___CACTATCTGGATAAACATTCAAGCCTGAGATTAATTTTCCCATGAGGATTGAACTTTATCTGAATGTGCTTAAAGAGAGATATTATTGGGAACGAAAAGGGATTTAACTATAATTGTTGAAAATAATGACGATGTTCTGTTCTTGTCC

Fln Alignment:

sp_v1.1_unigene16572___PCASRTTTKLYSRSLQLTSRPQTLHNLGLNRGPGPWVPNLHLTRPANKVWMTIRRAMDKDLESPGPSSSEQGFQTLQRILQWSIIKTCALFSTSLVISAMLFCNSAFASQESIKASQIGLKIASFMRRTGWPDELIVFVLATLPILELRGAIPVGYWMQLEPLKVSILAVVGNMVPVPFILLYLKQLVNYAGKRSSVASRFLDRLIEITRKKAGPIEEFQWLGLMLFVAVPFPGTGAWSGAIAATILDMPFWQAVSAXXXXXXXXXXXXXXXXXXXIKYAVIVGAILFFVSTVMWSFLRYVRKPPNNL
D5ADT6_______________PCASRTTQKLYSRSLQSTSGPQTVNNLGLNRVPGPWTLNLHFTRPTNKVWMAVPRAMNKDLENPDPSSSKQGFQTIQRASQWRIIKTSALFSASLVISASLLCSSAFASQESIKASQIGLKVASYMRRSGWPDELIVFVLATLPILELRGAIPVGYWMQLEPLKVSILAVVGNMVPVPFILLYLKQLVTYAGKRSSVASSFLDRLIEITRKKAGPIEEFQWLGLMLFVAVPFPGTGAWSGAIAATILDMPFWEAVSANFFGVVFAGLLVNLLVNLGIKYAVIVGAILFFVSTVMWSFLRHIRKPPNNL

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
653			16	83	0.994512
654		83	16		0.994512
655			16	83	0.994512
732			85	14	0.993533
740		10	90		0.90298
745		90	10		0.90298
747		10	90		0.90298
752	90			10	0.90298
754			10	90	0.90298
755			10	90	0.90298
756	90	10			0.90298
777		85		14	0.999981
980	40			60	1.0
985		47	52		1.0
1013	61	38			1.0
1016			61	38	1.0
1058	48			51	1.0
1240	80		20		0.995493
1257		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain