SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16563

Length: 1281 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16563 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDSL-motif lipase/hydrolase family protein	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	gdsl-motif lipase hydrolase family protein	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, GDSL	IPR001087	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLS1

Fln msg:

Fln protein: MAPYSQWGAKQARMECPWNQLILIFCFGLLHSHQNVESASPSALFVFGDSYVDTGNLPKTLGSWHRPYGVTFPGKPSGRHSDGKVLTDFVASTFQIPTPVAYNERDSNSSLLHFGMNFATGGTGVFNTWAGLPNASTQIDHLQELIDNGTYSPGNFTSSLVLFSVSGNDYGYYLLQQKGPQGLSSLVQSVNRQLSDDLVRLYNMGFRRFAVTNMAPMGCLPAVTIQNSYRRCNSTLNTLAIYHNSLLLGRLQMLRFNQADATFVLLDQYSDSLTIIRNPNLYGNFEEPLKPCCTGWCGYKDKAGKPVFSVCSHPESHFFWDIVHPTQAAWESLMTLFGPPLRTFQI*

Protein Length: 348

Fln nts: ATGGGGGACTAGAGGTTGGCCTCTGTCCCCGGTTTCCTCGCTCTTCGCGTTATAAAACGA_-_ATGGCTCCCTACTCACAATGGGGTGCAAAACAAGCGAGAATGGAGTGTCCATGGAATCAGCTTATTCTTATTTTCTGCTTCGGATTGCTTCATAGTCATCAGAATGTGGAAAGTGCGAGCCCAAGCGCGTTGTTTGTGTTTGGAGATTCATATGTTGACACCGGAAATCTTCCGAAAACGTTGGGCTCCTGGCACCGTCCCTATGGTGTAACCTTCCCCGGAAAACCATCCGGCCGACATTCAGATGGAAAAGTCCTTACGGATTTTGTAGCTTCAACGTTCCAGATCCCTACGCCAGTGGCGTATAATGAGCGAGATAGCAATTCCAGCCTGCTTCATTTCGGCATGAACTTTGCAACCGGCGGGACCGGCGTCTTTAATACATGGGCAGGACTGCCCAATGCAAGCACCCAAATTGACCATCTGCAGGAACTGATCGACAATGGAACATACTCGCCAGGCAATTTTACGTCTTCTTTGGTACTCTTCTCGGTCTCGGGCAACGATTATGGCTATTACCTTCTGCAACAAAAAGGCCCCCAGGGTCTGTCATCGCTTGTTCAATCGGTGAACAGGCAGCTGTCGGATGATTTAGTGCGTTTGTACAATATGGGTTTCAGAAGGTTTGCAGTAACAAATATGGCGCCAATGGGTTGCTTGCCGGCTGTTACAATACAAAACTCTTATAGACGTTGCAATTCTACATTAAACACATTAGCCATATATCACAACAGTCTTTTGCTGGGCAGGCTGCAAATGTTAAGATTTAATCAAGCAGATGCAACCTTTGTGCTTCTGGATCAGTATTCAGATTCCCTAACAATTATTCGAAATCCAAATCTCTATGGGAATTTCGAGGAGCCACTGAAACCCTGTTGCACGGGTTGGTGCGGCTATAAAGACAAGGCGGGGAAGCCTGTGTTTAGCGTATGCTCCCATCCAGAATCACATTTCTTTTGGGATATAGTGCACCCAACGCAGGCCGCTTGGGAATCATTGATGACACTCTTCGGACCCCCGCTTCGCACATTTCAAATTTGA___CTCGGCGATTTAGACAGATGCATTTACGTGTAAATCAATTTTACTGAGGGTGCTTAAGACTCGAAATAATTTGTAATACAAGTAACCTATTTCCCTTTGTTGTTGTAGTTCTTAATTTATTAATCTATACATTTTGGTAATTTCTTAATACCCTGTGGAAGAGATTGGTTTTCGCTACTT

Fln Alignment:

sp_v1.1_unigene16563___ALFVFGDSYVDTGN---LPKTLGSWHRPYGVTFPG-KPSGRHSDGKVLTDFVASTFQIPT-PVAYNERDSNSSLLHFGMNFATGGTGVFNTWAGLPNA---STQIDHLQELIDNGTYSPGN------FTSSLVLFSVSGNDY--GYYLLQQKGPQ-GLSSLVQSVNRQLSDDLVRLYNMGFRRFAVTNMAPMGCLPA--VTIQNSYRRCNSTLNTLAIYHNSLLLGRLQMLRFNQADATFVLLDQYSDSLTIIRNPNLYGNFEEPLKPCC-TGWCGYKDKAGKPVFSVCSHPESHFFWDIVHPTQAAWESL
A9NLS1_______________ALFIFGDSTVDVGNNNYLFTLVKSNFPPYGRDFDTHNPTGRFCDGRLATDYVAETLGFTSFPPAYLSPQASGQNLLTGVNFASGASGIYDDTAQRSNAISMTQQLQYFQQYQSKVEKSVGRANVSTIVSKALYVVSAGASDFVQNYYINPQLLKQFTVPQFVEFLLQKFSAFTQRLYKLGARRIGVTSLPPLGCLPASITLFGNGENVCVSRLNSDSQHYNTRLQATVNSLAKSLPGLKIIVFDIYTTLYSFVQHPSDNG-FAEARRACCGTGVIETAVLCNPRSIGTCANASQYVFWDSFHPTQAANELL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1066	34		65		1.0
1099	36		64		1.0
1195		18		81	0.999994
1203	12	87			0.992554
1204		87		12	0.992554
1205		87		12	0.992554
1206		87		12	0.992554
1207	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain