SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16554

Length: 1887 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16554

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	organic anion transporter, putative	-	-	65%
FL-Next	sp=UDP-galactose transporter 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	72%
Blast2go	organic anion	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	0.0	84%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF250	IPR004853	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SRE4

Fln msg: your sequence is longer than subject: 390 - 347

Fln protein: MAAIRVCPVSFRFIYSALHTLPTSNFEGQPFGIRGLLVLLKMASEKKAAVSDIGAWAMNVISSVGIIMANKQVMSRDGYDFRFATTLTAFHFTLTALVGFVSNATGYSAAKEVPLWELLWFSVVANTSIVGMNLSLMLNSVGFYQISKLSMIPVVCVMEWILHNKKYTREVKAAVVVVVIGVGVCTVTDVKVNLKGFVCAAVAVLCTSLQQISIGSLQKKYNVGSFELLSKTAPIQAASLLAFGPFADYYLNGRNLLEYKFSSGAILFILLSCILAVFCNLSQYLCIGRFSAVSFQVLGHMKTVCVLILGWLLFDSALTAKNIMGMSVAVIGMIIYSWAVEVAKQATAKSLSMMPVKETDFTEEDVSLLKSGFEINGTKDIELGGATKQ*

Protein Length: 391

Fln nts: CGTCGTGACC_-_ATGGCAGCCATCAGGGTGTGCCCCGTTTCTTTTAGATTTATATATTCAGCCCTTCATACATTACCCACTTCTAATTTCGAAGGCCAGCCATTTGGAATTAGAGGTCTGCTGGTTTTGTTGAAGATGGCTTCAGAGAAGAAAGCAGCAGTATCCGACATAGGAGCATGGGCTATGAATGTCATAAGCTCAGTGGGGATTATCATGGCCAATAAGCAAGTCATGTCCAGAGATGGGTATGACTTCAGATTCGCTACAACATTAACTGCTTTCCACTTCACTCTGACTGCATTGGTGGGATTTGTGTCAAATGCTACTGGGTATTCTGCTGCCAAGGAAGTGCCTTTGTGGGAATTGCTCTGGTTCTCTGTTGTTGCCAATACATCTATTGTGGGGATGAACCTGAGTCTCATGTTAAACTCAGTCGGATTTTATCAGATTTCAAAGTTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATTCTTCACAACAAGAAATATACCAGAGAGGTCAAGGCAGCTGTGGTTGTTGTGGTTATTGGTGTTGGTGTCTGCACCGTCACAGATGTGAAGGTCAATCTCAAAGGGTTTGTCTGTGCTGCGGTGGCTGTGTTATGTACCTCATTGCAACAAATTTCAATTGGCTCCTTACAAAAGAAGTACAATGTTGGCTCTTTTGAACTCCTAAGCAAGACTGCTCCTATACAGGCTGCATCTCTTTTAGCATTTGGCCCTTTTGCAGATTATTATCTAAATGGGCGCAACTTATTAGAATACAAATTTTCATCTGGTGCAATTCTTTTTATACTCCTTTCATGCATTCTAGCCGTGTTCTGCAACCTGAGCCAATATCTCTGCATTGGGCGATTCTCAGCAGTTTCATTTCAGGTTTTGGGCCACATGAAAACTGTTTGTGTCCTTATATTGGGTTGGCTGCTTTTTGATTCAGCATTGACTGCCAAAAATATAATGGGGATGTCTGTTGCTGTTATCGGCATGATAATCTATAGTTGGGCAGTGGAGGTTGCAAAACAAGCCACTGCAAAAAGCTTATCCATGATGCCTGTGAAAGAAACTGATTTTACAGAGGAGGATGTCAGTCTACTAAAGAGTGGATTTGAGATCAATGGTACAAAAGATATTGAACTAGGTGGGGCAACAAAACAATAG___TTTAGTCTTTATGACAATGGCATAGGTGAGACTGATATAAGGAATGCCCCAGCTGTTTCAAGTCACTCTTTCCATCTATGGTTCACGTTGGAGAGCATGGGGGAACAATGATGATAGATGTTTATGAGATAGCTAGATGGTCTTCTTTGATTTTCAAACAGAGTTATAACGGCTACTTGAAGAGTGGCAGCGAGCTTCGTTGATGGTAAATTTTATTTATCTCAGACTATTGGAACAAAGGCCTTCCTCTGGAGTCTGTATATAGTCGAGAGATACAATCTTTTAGTTGCAATGAAATTTATTTTTCTGTATTCTGAAGGAAATGCTGCTCATAATGCCCAAAAAGAGAGTAGCTGCTACATTGTACATGTCTAGTAATTTTTTTTTCCAAGACAGGTAGCATTGAGATGCATATTTTATCATGCCATCCCAGAATATTTAGCAATTAAATGGCAACTGTGTGTAGGTTAACCCATTTCATGTCATTAGTATTGTTTTATATTAATGTGACATCAAATCCATATTTTATTCTTTTCCTTGCAAACGGCCCGTTTGCAAGAAGCATTGTATTCTTTCTTCTAGGAAAGAGTTTTATTGAAGCAAATTGTACCTTTTGATTATTCAGTCATATAGACACAATTTAGAAGTAATAGTCTCTATTTGCTGATAAATCATTTGTGCACAAGTGTATCTTCCTAGCATGCCAT

Fln Alignment:

sp_v1.1_unigene16554___KMASEKKAAVSDIGAWAMNVISSVGIIMANKQVMSRDGYDFRXXXXXXXXXXXXXXXVGFVSNATGYSAAKEVPLWELLWFSVVANTSIVGMNLSLMLNSVGFYQISKLSMIPVVCVMEWILHNKKYTREXXXXXXXXXXXXXXXXXXXXKVNLKGFVCAAVAVLCTSLQQISIGSLQKKYNVGSFELLSKTAPIQAASLLAFGPFADYYLNGRNLLEYKFSSGAILFILLSCILAVFCNLSQYLCIGRFSAVSFQVLGHMKTVCVLILGWLLFDSALTAKNIMGMSVAVIGMIIYSWAVEVAKQATAKSLSMMPVKETDFTEEDVSLLKSGFEINGTKDIELG
Q9SRE4_______________KPESEKKSAVSDVGAWAMNVISSVGIIMANKQLMSSSGFGFGFATTLTGFHFAFTALVGMVSNATGLSASKHVPLWELLWFSIVANISIAAMNFSLMLNSVGFYQISKLSMIPVVCVLEWILHSKHYCKEVKASVMVVVIGVGICTVTDVKVNAKGFICACTAVFSTSLQQISIGSLQKKYSVGSFELLSKTAPIQAISLLICGPFVDYLLSGKFISTYQMTYGAIFCILLSCALAVFCNISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSEMTFKNIAGMAIAIVGMVIYSWAVDIEKQRNAKS---TPHGKHSMTEDEIKLLKEGVEHIDLKDVELG

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
494	16			83	0.994512
524		83	16		0.994512
605		11	88		0.923564
649		85		14	0.993533
821	16	83			0.994512
837	12		87		0.992554
937			10	90	0.90298
956			10	90	0.90298
1227		13	86		0.999973
1228	7	71	7		0.999974
1270			61	38	1.0
1316	33			66	1.0
1348			75	25	1.0
1449	12		87		1.0
1828	25		75		0.996473
1832	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain