SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16545

Length: 2089 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16545
ATTGGGGGCAGCGAGAGCGTACGACAATTCCAAAAACTCTAACCGATGGCGGTGCCGTCCGTCGTCATCACAGAAAAGATTTTTCTTTACCATTTTATTGTCAATATCAAGAAGATTTTTCACTCTCTATATCTTCTCACAGTGAGTCGGTGATTCATAGCCAAAACAATCAGCGCTGCATCACACTACTGCTGTACTCTGAAAATCTTCATAAGAATGCCTGAACTGTATTTCGTCAATGATCTGCTGGAGAAGCCAGCGGAAACAGAAGCGGGAAAGGACCAGTCTGAGTGTAAGGACTATTTGGGAACCGCCATTTTGGCGGACCCTTTAAGAGAACTTTATTACCCTACCGGAGAGGCGTTTCTCATAAGAGCATTGAATTTGAAAGATGAGGTGGTCCAATCAACATGGACACAGCGGGGCTTTCGTTGCGGAGACCCTACCGTGTATAAAGGGTTATCGGGAACTGCATTCATGTGTCTCAGATCACATCAGATAACTGGGAATAAGGAGGATCTTGCATTATGCAGTGATATGATTGATTCTTGTGCAGCAGTGGCAAGGAGTTTAAGGCAGCATGTAACATTTCTCTGCGGCAAGGCTGGTATCTATGCTCTCGGTGCCGTTGTTTCCAAATACAAGGGTGATAATCAGCGAAAGGACTTCTTTTTAAATCTTTTCTGGGAGATAGCACAGGAGAGGGCACTTTCAGTGGGGCCAGAGGATGGGGGTTTTGGCATGCCGTATGAATTGATGTATGGGCGTGCAGGATTTCTATGGGCTGCATTGTTCATTAACAAATATCTTGGCGATGAAACAATACCTTGGAGTGTGTTGAGCCCAATTGTGGATGCTGTTTTAGCTGGTGGAAGAACGGGTGCATCCCATACACCTTGTCCCCTGATGTATCAATGGCATGGGACGAGGTACTGGGGGGCTGCACATGGGTTGGCTGGAATAATGCATGTCCTCCTTCATTTTCCACTAAATAAAGAAGACGCAGATGATGTCAAGGGAACATTGCTTTACATGATTAGAAAACGTTTCCCAGAGTCGGGAAACTTCCCATCAAGTGAAGGTAATACGAGGGACAAGCTTGTACAATGGTGCCATGGTGCACCTGGTATTGCAATGTCTCTTTGCAAGGCAGCACAGGTACTTCCAGCGGAACCTGTCTTTCGTCAAGCTGCAATTGAAGCTGGTGAATCGGTATGGAAGAAGGGTCTTCTCAAAAAAGTTGGACTATGCCATGGAGTTAGTGGAAATGCTTACACATTTCTTGCCCTTTACCGTTTAACAAAAGAAGAACTATATCTTAATCGAGCAAAGGCATTCACTGGATTCCTTTATAACAATGGGAGGAAACTTATTGCATCTGGTCAGATGCATGGTGGAGATCACCCATACTCTCTATTTGAAGGCTTGGCAGGGACTGCATGCTTATACTTTGATATGGTGAAGCCTGAGCAGTCAAGGTTTCCTGGTTTTGAGTTGTAAAAAATAGGCTTGTTTATTATCATTTGACGAGTTTAAAAGGATTGTAAATTTCCATGGTACAGTTGCACCAGCCATATGAGATTTAGATGCCCACTACCTCAGTAACCTTTCCTTGGAGGGGTATACCGTATACAAGATGCATATGGATATATTCTTCCTATGTAACGTTTTACCCTGTAGCGTCTTTGTTGAGTGATGCTGTAAGAACCTGTTGATGTATATTACCTGATAGTCGTTTTGTGACCACTGTAGTCGTTCATCAAAGTTTATCATCAATCCCTGTTAAATTTTGCAGCTTTAAATGTTTAATTAAAGTTCTGTTTGCTTACGGTTGCAGGAGCCCTGAGATTTTTCAAATGTATTTGTACTCACTAGCCTTTTTTGAGTTGTGCACAAGGCACACAGTTTAGTTATGTTGTTGGATAGCCTTTTTTAAGTGGCCTCCTTTCTGGAGTTTTGGACAATTTGTAGTGTATATTGATCTCATTAGAGATTCCTCTAACTACTGTGTTATCCATTTGCCATCTCACCAATGTTGATATATTTTATAGCTTGAAATATAAGATGAAGCCCAGAGAATACCTGATAG

Ace file of the UniGene sp_v1.1_unigene16545

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	LANC_like domain containing protein	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	73%
Blast2go	plastid	GO:0009536	Cellular Component	73%
Blast2go	extrinsic to membrane	GO:0019898	Cellular Component	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV23

Fln msg:

Fln protein: MPELYFVNDLLEKPAETEAGKDQSECKDYLGTAILADPLRELYYPTGEAFLIRALNLKDEVVQSTWTQRGFRCGDPTVYKGLSGTAFMCLRSHQITGNKEDLALCSDMIDSCAAVARSLRQHVTFLCGKAGIYALGAVVSKYKGDNQRKDFFLNLFWEIAQERALSVGPEDGGFGMPYELMYGRAGFLWAALFINKYLGDETIPWSVLSPIVDAVLAGGRTGASHTPCPLMYQWHGTRYWGAAHGLAGIMHVLLHFPLNKEDADDVKGTLLYMIRKRFPESGNFPSSEGNTRDKLVQWCHGAPGIAMSLCKAAQVLPAEPVFRQAAIEAGESVWKKGLLKKVGLCHGVSGNAYTFLALYRLTKEELYLNRAKAFTGFLYNNGRKLIASGQMHGGDHPYSLFEGLAGTACLYFDMVKPEQSRFPGFEL*

Protein Length: 429

Fln nts: ATTGGGGGCAGCGAGAGCGTACGACAATTCCAAAAACTCTAACCGATGGCGGTGCCGTCCGTCGTCATCACAGAAAAGATTTTTCTTTACCATTTTATTGTCAATATCAAGAAGATTTTTCACTCTCTATATCTTCTCACAGTGAGTCGGTGATTCATAGCCAAAACAATCAGCGCTGCATCACACTACTGCTGTACTCTGAAAATCTTCATAAGA_-_ATGCCTGAACTGTATTTCGTCAATGATCTGCTGGAGAAGCCAGCGGAAACAGAAGCGGGAAAGGACCAGTCTGAGTGTAAGGACTATTTGGGAACCGCCATTTTGGCGGACCCTTTAAGAGAACTTTATTACCCTACCGGAGAGGCGTTTCTCATAAGAGCATTGAATTTGAAAGATGAGGTGGTCCAATCAACATGGACACAGCGGGGCTTTCGTTGCGGAGACCCTACCGTGTATAAAGGGTTATCGGGAACTGCATTCATGTGTCTCAGATCACATCAGATAACTGGGAATAAGGAGGATCTTGCATTATGCAGTGATATGATTGATTCTTGTGCAGCAGTGGCAAGGAGTTTAAGGCAGCATGTAACATTTCTCTGCGGCAAGGCTGGTATCTATGCTCTCGGTGCCGTTGTTTCCAAATACAAGGGTGATAATCAGCGAAAGGACTTCTTTTTAAATCTTTTCTGGGAGATAGCACAGGAGAGGGCACTTTCAGTGGGGCCAGAGGATGGGGGTTTTGGCATGCCGTATGAATTGATGTATGGGCGTGCAGGATTTCTATGGGCTGCATTGTTCATTAACAAATATCTTGGCGATGAAACAATACCTTGGAGTGTGTTGAGCCCAATTGTGGATGCTGTTTTAGCTGGTGGAAGAACGGGTGCATCCCATACACCTTGTCCCCTGATGTATCAATGGCATGGGACGAGGTACTGGGGGGCTGCACATGGGTTGGCTGGAATAATGCATGTCCTCCTTCATTTTCCACTAAATAAAGAAGACGCAGATGATGTCAAGGGAACATTGCTTTACATGATTAGAAAACGTTTCCCAGAGTCGGGAAACTTCCCATCAAGTGAAGGTAATACGAGGGACAAGCTTGTACAATGGTGCCATGGTGCACCTGGTATTGCAATGTCTCTTTGCAAGGCAGCACAGGTACTTCCAGCGGAACCTGTCTTTCGTCAAGCTGCAATTGAAGCTGGTGAATCGGTATGGAAGAAGGGTCTTCTCAAAAAAGTTGGACTATGCCATGGAGTTAGTGGAAATGCTTACACATTTCTTGCCCTTTACCGTTTAACAAAAGAAGAACTATATCTTAATCGAGCAAAGGCATTCACTGGATTCCTTTATAACAATGGGAGGAAACTTATTGCATCTGGTCAGATGCATGGTGGAGATCACCCATACTCTCTATTTGAAGGCTTGGCAGGGACTGCATGCTTATACTTTGATATGGTGAAGCCTGAGCAGTCAAGGTTTCCTGGTTTTGAGTTGTAA___AAAATAGGCTTGTTTATTATCATTTGACGAGTTTAAAAGGATTGTAAATTTCCATGGTACAGTTGCACCAGCCATATGAGATTTAGATGCCCACTACCTCAGTAACCTTTCCTTGGAGGGGTATACCGTATACAAGATGCATATGGATATATTCTTCCTATGTAACGTTTTACCCTGTAGCGTCTTTGTTGAGTGATGCTGTAAGAACCTGTTGATGTATATTACCTGATAGTCGTTTTGTGACCACTGTAGTCGTTCATCAAAGTTTATCATCAATCCCTGTTAAATTTTGCAGCTTTAAATGTTTAATTAAAGTTCTGTTTGCTTACGGTTGCAGGAGCCCTGAGATTTTTCAAATGTATTTGTACTCACTAGCCTTTTTTGAGTTGTGCACAAGGCACACAGTTTAGTTATGTTGTTGGATAGCCTTTTTTAAGTGGCCTCCTTTCTGGAGTTTTGGACAATTTGTAGTGTATATTGATCTCATTAGAGATTCCTCTAACTACTGTGTTATCCATTTGCCATCTCACCAATGTTGATATATTTTATAGCTTGAAATATAAGATGAAGCCCAGAGAATACCTGATAG

Fln Alignment:

sp_v1.1_unigene16545___MPELYFVNDLLEKPAETEAGKDQSECKDYLGTAILADPLRELYYPTGEAFLIRALNLKDEVVQSTWTQRGFRCGDPTVYKGLSGTAFMCLRSHQITGNKEDLALCSDMIDSCAAVARSLRQHVTFLCGKAGIYALGAVVSKYKGDNQRKDFFLNLFWEIAQERALSVGPEDGGFGMPYELMYGRAGFLWAALFINKYLGDETIPWSVLSPIVDAVLAGGRTGASHTPCPLMYQWHGTRYWGAAHGLAGIMHVLLHFPLNKEDADDVKGTLLYMIRKRFPESGNFPSSEGNTRDKLVQWCHGAPGIAMSLCKAAQVLPAEPVFRQAAIEAGESXXXXXXXXXXXXXXXXSGNAYTFLALYRLTKEELYLNRAKAFTGFLYNNGRKLIASGQMHGGDHPYSLFEGLAGTACLYFDMVKPEQSRFPGFEL
A9NV23_______________MPELFFVNNLLDRPAEAETEKGQSERKDYSGTAILAEPFRELYFPAGDVFLKTALNLKDEVVQSTWTQRGFRCRDPTVYKGLSGTAFMCFRSHQITGNNEDLALCSEIIDSCAAVARSLRHHVTFLCGEAGIYALGAVVAKYKGDNQRKDFFLNLFCEVAQERALSVGPEDGGFGMPYELMYGRAGFLWAALFVNKHLGGETIPWRVLSPIVDAVLAGGRTGASHTLCPLMYQWNGTRYWGAAHGLAGIMHVLLHFPLNKEDADDVKGTLHYMIRNRFPESGNYPSSEGNKRDKLVQWCHGAPGVAMSLCKAAQVLPGEPVFRQAAVEAGELVWKKGLLRKVGLCHGISGNAYTFLALYRLTKEELYLNRAKAFTGFLYNNGRRLIASGQMHGGDHPYSLFEGLAGTACLYFDMVKPEHARFPGFEL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1200			10	90	0.90298
1340			14	85	0.993533
1419	83	16			0.994512
1420			16	83	0.994512
1422		16		83	0.994512
1424	83			16	0.994512
1425	83		16		0.994512
1426	16		83		0.994512
1427		16	83		0.994512
1434	66			33	0.997452
1436			66	33	0.997452
1437		33	66		0.997452
2001		75	12		0.975346
2004		25		75	1.0
2010		83		16	0.994512
2017	83	16			0.994512
2019		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain