SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16540

Length: 1468 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16540

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Type III chlorophyll a /b-binding protein n=2 Tax=Pinaceae RepID=Q02071_PINSY	-	-	93%
FL-Next	tr=Type III chlorophyll a /b-binding protein; Pinus sylvestris (Scots pine).	-	-	97%
Blast2go	type iii chlorophyll a b-binding protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis, light harvesting	GO:0009765	Biological Process	86%
Blast2go	protein-chromophore linkage	GO:0018298	Biological Process	86%
Blast2go	metal ion binding	GO:0046872	Molecular Function	86%
Blast2go	chlorophyll binding	GO:0016168	Molecular Function	86%
Blast2go	plastoglobule	GO:0010287	Cellular Component	86%
Blast2go	light-harvesting complex	GO:0030076	Cellular Component	86%
Blast2go	photosystem II	GO:0009523	Cellular Component	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%
Blast2go	photosystem I	GO:0009522	Cellular Component	86%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Chlorophyll A-B binding protein, plant	IPR001344	-	86%
Blast2go	Chlorophyll A-B binding protein	IPR022796	-	86%
Blast2go	Chlorophyll a/b binding protein domain	IPR023329	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q02071

Fln msg:

Fln protein: MAAITAKALVSPSLSATGGDIGCRQQLLLGGKALVLPPYFSQSSRRTSFTVRSQASSNKPVKQGDRQLWFASEQSLSYLDGSLPGDYGFDPLGLMDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKLGLIPQETALPWFQTGVIPPAGTYNYWADPFTLFVLEMALMGFAEHRRLQDYRNPGSMGKQYFLGLEKYLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNFITNMKLHNF*

Protein Length: 290

Fln nts: ATTGGGGTATGGTTAATTCGAATACGCCAACTCATCAAAGCAAGGGCTATTTTCTGTATTGGGTGCCTCTCTTTTCTCTCTGCTGAAAGTTCATAAAGAAATTATCTGCTAAA_-_ATGGCAGCAATTACAGCAAAAGCACTGGTTTCTCCTTCCCTCTCTGCCACAGGAGGGGATATTGGATGCAGGCAACAGTTGCTGTTGGGAGGAAAAGCTCTGGTTCTGCCACCATATTTCAGCCAATCATCAAGAAGGACTTCATTTACAGTCAGAAGCCAGGCATCATCGAACAAACCCGTCAAGCAAGGAGACAGGCAGCTTTGGTTTGCATCAGAACAGAGTCTCTCCTACTTGGATGGCAGCCTTCCTGGTGACTATGGATTTGATCCACTGGGCTTAATGGATCCTGAAGGACCTGGAGGTTTTATGGAACCAGGTTGGCTCGTTTATGGAGAAATCATCAACGGGCGATACGCAATGCTGGGTGCAGTTGGAGCCATTGCTCCTGAAATCTTAGGCAAGCTTGGGCTAATCCCACAGGAGACCGCACTTCCCTGGTTCCAAACTGGCGTCATTCCTCCAGCAGGGACATATAACTACTGGGCTGACCCTTTCACTCTTTTTGTGCTAGAGATGGCCCTGATGGGATTTGCAGAACACAGAAGATTACAGGATTACAGAAACCCCGGATCGATGGGAAAACAGTATTTCTTGGGATTGGAGAAATACTTGGGTGGTTCAGGTAATCCCGCATACCCCGGAGGTCCCTTATTCAATCCTCTGGGATTCGGTAAGGACGAGAAGTCCATGAAAGAATTGAAGCTGAAGGAGGTCAAGAATGGAAGGCTTGCAATGTTGGCTATCTTGGGTTATTTCATTCAGGGCCTTGTTACCGGAGTTGGGCCATTTCAGAACCTACTGGATCATTTGGCTGATCCAGTAAACAACAACTTTATCACCAACATGAAGCTCCACAACTTTTGA___ATATATTGTATGATGAACCTTCTGTATCTGTAAAATTGCAATGTAAAAGTAGAAGGATGTGCATGGATCTTTGTTAAGTATATTTAAGTTGGCTACTTATTTTTGTTTATTTGCATACCTTTATTCTGTGTCTAAGGGTCACGTTCATGTTGAACAGTCTTGCTGTTTATGAAATGTGTAATGAAACGTATCAAATTCCGTTGCAAAGTGATATTCATTTATCATCGACTCCAGTCTCCAGTCGTTGCTATTACAATAATATGCTGTAGATTGGATCTACTCGGTAGTTACAGCAGCATTCAGTACCTTTGGCACAACCTGGTGTGGCATATAGGAAGTAAACATGGTTGTAAGTCAGCAGCACAAGAATAGTATAGGTAATCACTGAGTTACCCTGGCACAAAATCCAAACAAAAGTTTGTTTTCTTATTTCCAGAGTTGTTATTGCAATTTTGTTTAATATTGTTAGTAACTGCTTTTTATCAATA

Fln Alignment:

sp_v1.1_unigene16540___MAAITAKALVSPSLSATGGDIGCRQQLLLGGKALVLPPYFSQSSRRTSFTVRSQASSNKPVKQGDRQLWFASEQSLSYLDGSLPGDYGFDPLGLMDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKLGLIPQETALPWFQTGVIPPAGTYNYWADPFTLFVLEMALMGFAEHRRLQDYRNPGSMGKQYFLGLEKYLGGSGNPAYXXXXXXXXXXXXKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNFITNMKLH
Q02071_______________MAAITAKALVSPSLSAIGGDIGRRQQLLLGGKALVLPPYFSQSSRRTSFTVRSQASSNKPVKQGDRQLWFASDQSLSYLDGSLPGDYGFDPLGLMDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKLGLIPQETALPWFQTGVIPPAGTYNYWADPFTLFVLEMALMGFAEHRRLQDYRNPGSMGKQYFLGLEKFLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVHNNFLTNMKLH

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
562	85			14	0.993533
883		83		16	1.0
1090	2			92	0.992495
1092	5			94	0.998894
1093	6			93	0.99903
1094	6			93	0.999153
1209	10		90		0.90298
1211	20	60		20	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain