SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16530

Length: 1355 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16530

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sec61 alpha subunit n=3 Tax=BEP clade RepID=Q94B06_HORVU	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	sec61 transport protein	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	96%
Blast2go	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	96%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	96%
Blast2go	membrane	GO:0016020	Cellular Component	96%
Blast2go	mitochondrion	GO:0005739	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Blast2go	SecY protein	IPR002208	-	96%
Blast2go	Translocon Sec61/SecY, plug domain	IPR019561	-	96%
Blast2go	SecY subunit domain	IPR023201	-	96%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ6

Fln msg: Distance to subject end: 124 aas, your sequence is shorter than subject: 353 - 478

Fln protein: MPSGGFRVLHLVRPFLSILPEVQTAERKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNSVREDRALLNGAQKLLGVLITIGEAVAYVLSGMYGDIADLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLVVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFLVNMLGKWKESEYSASGQSVPVGGLVYYITPPS

Protein Length: 354

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAGATGAGCATGACATGAACGGCGACTAAAGCCATTTGCTGTGAATAAGCAGAGCCAGGCAGTGCTTCAAAGGCGAGTTTGTCATCGACTAAGGGTTAGTAATCACCCTTAATTCATTAGAGGGCATGGAGGTGCTAGGTTAGGCAGCTGGTATTTCGAAGGCAGAGGCGCATCTATTGCAGATCGTTAATCCCCTGCAGCGGATCAGTAGTTTTCCAGGCCCAAATTTGTAAGTTTGTTAATTTGGACTGTTCTTTGGAGAAGGAAAA_-_ATGCCAAGCGGTGGGTTTCGTGTGCTGCATCTTGTGAGACCATTTCTTTCAATCTTACCAGAAGTCCAGACGGCTGAAAGAAAAGTACCCTTTAGGGAGAAGGTTCTTTACACTGTAATCTCCCTTTTCATCTTTCTCGTATGCAGTCAGTTGCCTCTATATGGAATACATTCAGCAACCGGTGCGGATCCATTCTATTGGATGCGTGTAATTCTGGCTTCTAATCGGGGAACTGTCATGGAACTTGGTATCACCCCAATTGTTACCTCGGGCCTAGTAATGCAACTTTTGGCAGGATCCAAGATAATCGAGGTGGATAATAGTGTTCGTGAAGATCGGGCACTGCTCAATGGTGCTCAGAAGTTACTTGGAGTTCTCATCACAATAGGTGAGGCAGTTGCATATGTGCTGTCTGGAATGTATGGTGACATCGCAGACCTTGGAGCTGGCAATGCCATCCTTATTATTGTCCAGCTCTTTTTTGCTGGTATAATTGTGATATGTTTGGATGAGTTACTCCAGAAAGGGTATGGATTGGGGTCTGGCATTTCGTTGTTCATTGCTACTAATATATGTGAGAGCATAATATGGAAGGCATTTAGTCCTACAACAATTAATAGTGGACGAGGTGCAGAGTTTGAGGGAGCTGTCATTGCATTGTTCCATTTGTTGATAACCAGAACTGACAAGGTCCGGGCTCTGCGAGAAGCTTTTTATAGGCAGAATCTACCAAATGTCACCAACCTGCTTGCCACAGTTTTGGTTTTTCTCGTTGTAATATACTTCCAAGGTTTTCGTGTTGTTTTACCTGTGAGGTCAAAGAATGCACGTGGGCAGCAGGGGTCATATCCTATCAAGTTATTCTATACCTCAAACATGCCAATTATTCTGCAGTCAGCTCTTGTTTCAAATTTGTATTTTATTTCCCAGCTGCTTTATCGAAAGTACAGTGGAAACTTCCTTGTTAATATGTTGGGAAAGTGGAAGGAGTCTGAATACTCAGCAAGCGGGCAGTCAGTTCCTGTAGGTGGTCTTGTTTATTACATTACTCCACCTTCCAG

Fln Alignment:

sp_v1.1_unigene16530___MPSGGFRVLHLVRPFLSILPEVQTAERKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNSVREDRALLNGAQKLLGVLITIGEAVAYVLSGMYGDIADLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLVVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFLVNMLGKWKESEYSASGQSVPVGGLVYYITPPS
B8LKZ6_______________MPSGGFRVLHLVRPFLSILPEVQTADRKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADPFYWMRVILASNRGTVMELGITPLVTSGLVMQLLAGSKIIEVDNSVREDRELLNGAQKLLGVLITIGEAVAYVLSGMYGDITDLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFLVNMLGKWKESEYSSSGQSIPVGGLVYYITPPS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
779			10	90	0.90298
1230	10		90		0.90298
1237	90	10			0.90298
1245		90		10	0.90298
1249	18		81		0.999994
1280	11		88		0.923564
1305		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain