SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16528

Length: 1503 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16528

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein binding protein, putative	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	apoptotic process	GO:0006915	Biological Process	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	77%
Blast2go	BAG domain	IPR003103	-	77%
Blast2go	Ubiquitin supergroup	IPR019955	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZJ4

Fln msg:

Fln protein: MSNRSSSRTLFSGSAEDRSDAIDWELRPGGMLVQKRDDGGAAAGPMIKVKVSHGSYQREVSIPAQATFGDLKKLLSQETGLEPQEQRLLFRGKEKENDECLHIAGVKDMAKVILMEDPASKERKLEEMKRNQSVTKSCQAISAVKAEVDKLSVQVSAIEAAVNGGTKVSDNNFIVVTEMLMVQLLKLDGIEAEGEAKVQRRIEVRRVQNYVETMDALKIRNANPLCRNTVAVTTKWETFDSGVGSLNAPPPSASTKITQDWESFD*

Protein Length: 267

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGGTGTGGGCTCCCTGATCAACTACGTCTTGGACCTCACCACATGCCCACAATTTTTTTCTTTAAGCCTGCAGATTTCGATTGGTTCATTCATCCGGTTACAACTTTTGTCTAAAGCTGTGGCATTACGAGTGTAGAAGAGAGCAAAGGATTGTCAGTGCAGTTGACAGGAGGAGAC_-_ATGAGCAACAGGTCCAGTTCCAGAACCCTTTTCAGCGGCAGCGCAGAGGATAGAAGCGATGCCATAGATTGGGAATTGAGGCCTGGAGGCATGTTGGTTCAGAAGAGAGATGACGGTGGCGCTGCAGCTGGGCCTATGATTAAGGTTAAGGTTTCCCATGGTTCATACCAGCGTGAAGTTTCGATTCCTGCGCAGGCTACCTTTGGGGACCTCAAGAAGCTATTGTCCCAGGAGACTGGGTTGGAGCCTCAGGAACAAAGGCTTTTGTTCAGAGGAAAAGAGAAGGAGAATGATGAATGCCTGCATATAGCAGGTGTCAAAGACATGGCAAAGGTGATTCTGATGGAGGATCCTGCCAGTAAGGAGAGGAAATTGGAGGAAATGAAGAGGAATCAGAGCGTTACAAAATCTTGTCAGGCAATTTCTGCAGTTAAGGCTGAAGTGGACAAGCTTTCGGTACAGGTTTCAGCGATAGAGGCAGCTGTGAATGGTGGAACCAAGGTTTCAGACAATAATTTTATCGTGGTAACTGAGATGCTAATGGTCCAGCTGCTTAAATTGGACGGTATCGAGGCAGAAGGGGAAGCTAAGGTGCAAAGAAGAATAGAGGTTCGAAGGGTACAGAACTATGTTGAGACGATGGATGCTTTAAAGATCCGCAATGCAAATCCATTATGCAGAAACACTGTAGCTGTCACCACCAAGTGGGAGACCTTTGATTCTGGTGTAGGCAGTTTGAATGCTCCTCCACCCTCTGCATCTACCAAGATCACTCAGGACTGGGAATCATTCGACTGA___GGATATGTTATTAGATTTTTAGAACAATATTTTGCTTTTGGAAAGGAAGCCTACCATTCTTTAGAGACAGACATTGTATCCCTGAGGTTGAAAAGCATGAAGGAATGGACAAATCTTCCTGAATCAACAATACATGTTATTTTCATATGTAACAGTGAACAGTATCTACTTGGGGTAATTACTTTGATTACCTGATTCAATCTCTTCTATTTGACAAGATATTTTGTCACGTGTTTTGTTTTTGCTTTACTCCATTACTGGAAGTTTGTAGGCTGAATTAGCAGAGGCTAATTGATGGTGCAACTGTTCCTTTATGCATAGCCTACAATGTCATGAAGCCAGACAGAGCTTTTACAGTTGGAACATTTGTGACATCAGACAAAACAATGTTTTTGCGCAGTTAGACTTCTGTTTTACTTGTACCTGAAAATTATCTGCGAGTTTGTACATAGAGAAAATTATTTGTATCAAAATGGATGGAATTTGATAGTCTAGTAAGT

Fln Alignment:

sp_v1.1_unigene16528___SGSA-EDRSDAIDWELRPGGMLVQKRD---DGGAAAGPMIKVKVSHGSYQREVSIPAQATFGDLKKLLSQETGLEPQEQRLLFRGKEKENDECLHIAGVKDMAKVILMEDPASKERKLEEMKRNQSVTKSCQAISAVKAEVDKLSVQVSAIEAAVNGGTKVSDNNFIVVTEMLMVQLLKLDGIEAEGEAKVQRRIEVRRVQNYVETMDALKIRNA--NPLCRNTVAVTTKWETFDS
A9NZJ4_______________SGSAAKDVADSIDWEVRPGGMLVQRRDPDADQESAPCPKIKVRVTHGSSLHEVSVSMQATFGELKKLLAPETGLEPQDQKLIFRGKERDGKDFLDLAGVKDKSKIVLMEDPMSREKKYIEMRKNAKMERASRAIAEVSLEVDKLAAQLSSLEAVIAKGKRVAENDLVDLTEMLMRQLVKLDSITADGDAKLQRRMQVRRVQKYVETLDILKVRNARQNSSSQQPVVVTTKWETFES

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
940			75	25	0.996473
941			25	75	0.996473
942			25	75	0.996473
943			25	75	0.996473
972	80		20		0.995493
973	80			20	0.995493
974		20	80		0.995493
975	80		20		0.995493
977		80	20		0.995493
982	80			20	0.995493
983			80	20	0.995493
985	80		20		0.995493
989			80	20	0.995493
990		20	80		0.995493
992	80	20			0.995493
1056			8	92	0.999718
1057	92			8	0.999718
1059		92	8		0.999718
1060	92			8	0.999718
1061			8	92	0.999718
1062	8			92	0.999718
1064		8		92	0.999718
1067	92		8		0.999718
1069	92	8			0.999718
1071	92			8	0.999718
1074		8	92		0.999718
1075	92			8	0.999718
1246	13			86	1.0
1323		10		90	0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain