SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16519

Length: 1524 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16519

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Axoneme-associated protein mst101, putative n=1 Tax=Ricinus communis RepID=B9SR05_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	81%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF1014	IPR010422	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPG4

Fln msg:

Fln protein: MPKKMGTNSKAEEARARKNMAEAEKKKKEEHEKVEQYWKDAEGPKSKAAKKKEEEAAKRAEAAAKKAELRKLQELEEKELEKAGKKVDKKANRVSIPVPKVTEVELARQKEEERKQMEARVEAAKKRGSRMADEEEYEKMVLIENKNRDDSLLEAHSVEEAIEQMAVSTLPPDRHPERRLKASFKAFEEAELPRLKEEKPGLLHNQYKDLLWKLWKKSPDNPLNQAAE*

Protein Length: 230

Fln nts: ATGGGGAGTGATCCTACCATGTTATTTTAATGAAAAGTGATCCTACCATGTTATTTTATTCTGTGGAAAAACTATAAAGCTGTTTACACTCATCCACACGGCGCGGAGGACCGCAAGCTACAGCAGGCCATTTGACGCAATTACTACTGGTTGTCATTTACTTGTTAACAATTTAAATTTTGAATAATTGAAG_-_ATGCCTAAGAAAATGGGAACTAATAGCAAGGCCGAAGAGGCCAGGGCTCGGAAGAACATGGCCGAGGCTGAGAAGAAGAAAAAAGAAGAACATGAGAAGGTGGAGCAGTACTGGAAGGATGCGGAGGGTCCTAAATCAAAAGCAGCCAAGAAGAAAGAAGAAGAAGCTGCAAAGCGTGCCGAGGCTGCTGCAAAGAAAGCTGAGTTGCGCAAGCTCCAGGAGCTGGAAGAGAAAGAGCTGGAGAAGGCTGGAAAAAAGGTTGATAAGAAAGCAAACAGGGTCTCAATTCCTGTTCCCAAAGTTACAGAAGTAGAGCTTGCGAGACAGAAGGAAGAGGAGAGAAAGCAAATGGAGGCACGTGTTGAGGCAGCGAAAAAGCGGGGAAGTCGGATGGCTGATGAAGAAGAATATGAGAAAATGGTATTAATTGAGAACAAAAATAGAGATGATTCATTGCTTGAGGCTCATTCTGTTGAGGAAGCTATAGAACAGATGGCTGTTAGTACCCTACCTCCAGATCGACATCCCGAAAGACGGCTCAAGGCATCATTTAAGGCTTTTGAGGAAGCTGAACTCCCCAGATTGAAGGAAGAAAAACCAGGTCTTTTACACAATCAATACAAGGACCTGTTATGGAAGTTATGGAAGAAATCACCTGACAATCCTCTTAACCAGGCAGCAGAGTGA___TTTTCTTGAGAGACAAATTCTTAGGCTGTCAACGTTTTCTGGCGTTGGAGAAATAATCGTTGTACTACTGGAAGGTGCTCTGTTTTGCATAGAAACTTGGTCCTAGCCTTTTGTGCTGTTAAATTTAGGTTTCTTCATTCTTCCCATTGGTCAATTATCTCGAAGGTGATGTAAATACTTGCATCTTATTATGGGGAAGAGTACTTTGTTATGTTGATTATTGGTTATGCTCCTTGGAGATTTAAACTTTTATTCCTACAATATGATTATGCTTCTTCATTATGATCTTAATTTCTGAGAGGTATTATAGTTTGGAGTTCATTACATTTTAAGGAGAGGAGATGCGCATAGTCTATGTCTATGTTATCTTTTCTAGAAATATAATTCTAGCATGTTTGATCTCTGTCCCACAGAAGGTACTCATATAACTATTCATCTCTCAACAGGTTTATTCTTATTATTGGCATTTAATAGTAGCTTTGAAGTTCTTGTAAAGTTTACATTAAAATGTAAGCCAGCAGTCATTTCGAGAACCCTACTCTTACGCTTTTTGTCCCCTTCACTTTTGGATATGAGTGAGTTGGGTAGGCATAGAAGATTGCTGCGTGCTAATTATCAGGCTAAGCATGGTTGATTCAGTGAAC

Fln Alignment:

sp_v1.1_unigene16519___MPKKMGTNSXXXXXXXXXXXXXXXXXXXXXXXXVEQYWKDAEGPKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKVDKKANRVSIPVPKVTEVELARQKEEERKQMEARVEAAKKRGSRMADEEEYEKMVLIENKNRDDSLLEAHSVEEAIEQMAVSTLPPDRHPERRLKASFKAFEEAELPRLKEEKPGLLHNQYKDLLWKLWKKSPDNPLNQAAE
A9NPG4_______________MPKKMGVNSKAEEAKARKNTAEVEKKKKEAQEKEEQYWKDAEGPKSKAAKKKEEEAAKRAEAAAKKAELRKLQELEEKELEKAGKKVDKKANRVSIPVPKVTEAELAKQKEEERKQIEALVEATKKRGSRMADEEEYEKMVSIENTNRDDSLLEAHSVEEALEQMTVSTLPADRHPERRLKASFKAFEEAELPRLKEEKPGLLHNQYKDLLWKLWKKSPDNPLNQAAE

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
593	11			88	0.923564
594			88	11	0.923564
596	88		11		0.923564
597	11		88		0.923564
735	90			10	0.90298
736	70			30	1.0
739		80	20		0.999996
740	66			11	0.999999
744		12		87	0.992554
746		12		87	0.992554
750			87	12	0.992554
956		30	69		1.0
979		3		96	0.986325
982	3			96	0.986325
986	96			3	0.986325
988		96	3		0.986325
992		3		96	0.988939
993	3			87	1.0
994		3	94		0.930835
1035	94		5		0.999997
1076		4	95		0.995055
1078	93			4	0.973796
1079	95	4			0.995055
1081	95			4	0.995055
1298			66	33	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
348	359	AAG AAG AAG AAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain