SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16508

Length: 2657 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16508
ATGGGGGGCTTCGATTAAGATAAAATTAATCGACTGTGACTGTGGCACTGAAGTACCCAGGTTCATATCCATAGGCTTGACTTTCTACAAAGCCAAATTGCACACGGCAACTCTCTCTTTCTGGGAGCTTTCCCGCTACCTTGGTTTCTCGTCTTATTAAAATAAACTCTGATTTCGTTCACTGCCTATAGACTCTGCTTTCGTTCAAGGCATTGAAGTGCGGGAACAAGGTTAAAATCTCATCACGTTTACGAGATTAATGGGTAGATCGGAGTCTTTTTACTCCGAAAACTTGTTGGGTGCCTGCAATCTGTCTCGCAATGTTTACAGAAGCGCAGGCGATGATCCCAGCTATCTGAGGGCTGATTTAAACGAAACTACTGTTGCCATTGCTTTTCGTGGCATTCTCGATCCCCATGTCTTCCAAGCAACAGCAAGCAAGTTCGGAGAATGTCAAAGTGGTTTTCTGGAGTGGCTGAAAGATGGGAACAATCAACCAGCCTTTCTGCATCAGGGTTCGCTCAACCAATTTCTCTACCTATTGAATAATTCCAGATTTCAAGAAGAGGCCCTTCTGGAATATGAAAGGGGTAAGAACGTATTGTTCACTGGTCACTCCATGGGCGGAGCTATTGCCGCCTTGGCCACGCTATGGATGTTGGATAAGCACCAGCAGCAGCACCCTGGCAAGCCTAAATCTTTTTTCTGCATCACGTTTGGCTTCCCATTGATTGGGGACGAAACTCTCGCACGAGGAGTTCGTCGCAAGGGGTGGACGGATCACTTCTGCCATGTTGTCTCAGGACGTGATGTCATCTCTAGGGTTTTGTTGGCTCCTTCCATATCCGTGTCTGAGGCCTTGGAATCATTTTTACCATATTTGAAGAGATACCTGGAGAATGCAGGGGATTTACATGGTTCCACTGACACACCCATGGAAGAAGCCCTTCCACAGGGCAGTGCTGAGTTTGTGAGCACTGTACTCCAGTATTGCTCTGCTGTAGCGAATTATAATAGCGCAACCAACATGAGCCCCAACAACCCGTTAATGGCTGCTGTAAGGCCTCTAGTGAAGTTGAGTCCTTATAGGCCATTTGGCCATTATTTGTTCTGCTCCAAGCGTGGTGGGATTTGGATAGAAAATCATTTTGCTGTGTTTTCCTTTCTTTATTACGCCCTGCAATTTTCAGATGCTGCCCTGCAAATTTCAGATGCTAGTTGTGACGAATTCATCTTGGAGCACGTTGGTTATTCAAATAGCTTGCCCAGTGTCCTGCAAAATATAGTGAAGTTGAATGAGCTTTCAGAAATTCCTTTGTCGGAAACAGGATCAAACTATCAAGACAGCAGGACAATACAACTGGAAGCTCTTGGGCTTGGAATTCAGAATTGCCCAGCAAGACTTGCCCTCAGAGCTGCGGGACAATTTTCGAAGCAGCAGAGGGAGAACCTGACCAAATTGGAGAATGAAGTAAAAGGAAAGATAGAAGTGGCCATCAAAGAAATAGAAGAGTATCGTGCGCAGTGTCTCAGAAATGGCACTGGTTACTACGACTCGTTCAAAAAGAAGCAACATAGAACAGACTTTGATGCTAACCTTAACAGGCTGAAGCTGGCAGGCTGGTTCGACGAAATCATAACGATGATCAGCAAGGATGAGTTACCGGACGATTTCCAGTGTAGTGAAGTGTGGATAAGACTGGGCACTGACTACAGGCTACTAGTTGAGCCACTGGACATCGCGAATTATTACAGGTTGGGAAAAAACGAAGACTCTGGGCCTTATCTCAGAAATGCCAGGCCTCGTCGTTATACAATTCTCCAAAAGTGGTTGGAAGAAAATAATGTGATTCAACAGCAGCAGCCATCCCCTACAGGCTCTGATCAGCCCACGATGCTCACTCAAGACTCCTGTCTCTGGGCTCATGTTGAAGAAATTGCATGTTTAAGGCTTGCTAATAATGCAGGGGGTCATGAAAACTCCATAGCAGGATTGGAAAAGTCACTGAGGCCTTTGATTGATTCCAATGGTTTGTCTATGGAAGAACTTGTGGCTGGCAACTCTACCTTCAACAGTGTGGTCAAGTGGCTGTGGGCAAACATGACTCCACTGCAGAAATCAACCTCTCCCATCTCCGATGTTATTGGCAGGCACCCAGAACTGATGAACTAATCATGTAGATGATGTGAGTAGCCATTGCACAAGTAGTACATATTAGAGTAGTCTTGCTGTTTCTGTTGCTTTCTATACATTAGAACAAAGGTATTTCTCTTCACAATATCTTAAAGTTAAGATCAGCATTCACTCACATATATATAATGAGTGATGAGTACTGATTTGAAAGGGATGAAATGGTTTAATGGTTTTTGTATGAAATGGTTTTTATAAGTACTTATTTGAGTAGTCTGGTTATTTCAGTTGCATTATGTACACAAGGACTAAGATATATCTCCACACTCTGTTGATGCTAAGATCAGGGCTCATTCACATGTATATAATGAGTAGTACTGGTTTGAATATTGTTGTATTTCTGTTGCCAATGTATACAAGGAGTAAAGTTGTTTCTCTTTACAATATATTACTGTTAAGATCAGTACTCCAATGAGAAGGGGAGTTAAGTTCGGATTATCGTGAATAAAAAAAACCAGTTCATTTC

Ace file of the UniGene sp_v1.1_unigene16508

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	enhanced disease susceptibility 1	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	disease resistance protein	-	-	54%

Source	ECs	Term	Type	e value	Identity
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	0.0	54%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	54%
Blast2go	Metabolic pathways	01100		0.0	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	0.0	54%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	54%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, class 3	IPR002921	-	0.0	54%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVM4

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MGRSESFYSENLLGACNLSRNVYRSAGDDPSYLRADLNETTVAIAFRGILDPHVFQATASKFGECQSGFLEWLKDGNNQPAFLHQGSLNQFLYLLNNSRFQEEALLEYERGKNVLFTGHSMGGAIAALATLWMLDKHQQQHPGKPKSFFCITFGFPLIGDETLARGVRRKGWTDHFCHVVSGRDVISRVLLAPSISVSEALESFLPYLKRYLENAGDLHGSTDTPMEEALPQGSAEFVSTVLQYCSAVANYNSATNMSPNNPLMAAVRPLVKLSPYRPFGHYLFCSKRGGIWIENHFAVFSFLYYALQFSDAALQISDASCDEFILEHVGYSNSLPSVLQNIVKLNELSEIPLSETGSNYQDSRTIQLEALGLGIQNCPARLALRAAGQFSKQQRENLTKLENEVKGKIEVAIKEIEEYRAQCLRNGTGYYDSFKKKQHRTDFDANLNRLKLAGWFDEIITMISKDELPDDFQCSEVWIRLGTDYRLLVEPLDIANYYRLGKNEDSGPYLRNARPRRYTILQKWLEENNVIQQQQPSPTGSDQPTMLTQDSCLWAHVEEIACLRLANNAGGHENSIAGLEKSLRPLIDSNGLSMEELVAGNSTFNSVVKWLWANMTPLQKSTSPISDVIGRHPELMN*

Protein Length: 639

Fln nts: ATGGGGGGCTTCGATTAAGATAAAATTAATCGACTGTGACTGTGGCACTGAAGTACCCAGGTTCATATCCATAGGCTTGACTTTCTACAAAGCCAAATTGCACACGGCAACTCTCTCTTTCTGGGAGCTTTCCCGCTACCTTGGTTTCTCGTCTTATTAAAATAAACTCTGATTTCGTTCACTGCCTATAGACTCTGCTTTCGTTCAAGGCATTGAAGTGCGGGAACAAGGTTAAAATCTCATCACGTTTACGAGATTA_-_ATGGGTAGATCGGAGTCTTTTTACTCCGAAAACTTGTTGGGTGCCTGCAATCTGTCTCGCAATGTTTACAGAAGCGCAGGCGATGATCCCAGCTATCTGAGGGCTGATTTAAACGAAACTACTGTTGCCATTGCTTTTCGTGGCATTCTCGATCCCCATGTCTTCCAAGCAACAGCAAGCAAGTTCGGAGAATGTCAAAGTGGTTTTCTGGAGTGGCTGAAAGATGGGAACAATCAACCAGCCTTTCTGCATCAGGGTTCGCTCAACCAATTTCTCTACCTATTGAATAATTCCAGATTTCAAGAAGAGGCCCTTCTGGAATATGAAAGGGGTAAGAACGTATTGTTCACTGGTCACTCCATGGGCGGAGCTATTGCCGCCTTGGCCACGCTATGGATGTTGGATAAGCACCAGCAGCAGCACCCTGGCAAGCCTAAATCTTTTTTCTGCATCACGTTTGGCTTCCCATTGATTGGGGACGAAACTCTCGCACGAGGAGTTCGTCGCAAGGGGTGGACGGATCACTTCTGCCATGTTGTCTCAGGACGTGATGTCATCTCTAGGGTTTTGTTGGCTCCTTCCATATCCGTGTCTGAGGCCTTGGAATCATTTTTACCATATTTGAAGAGATACCTGGAGAATGCAGGGGATTTACATGGTTCCACTGACACACCCATGGAAGAAGCCCTTCCACAGGGCAGTGCTGAGTTTGTGAGCACTGTACTCCAGTATTGCTCTGCTGTAGCGAATTATAATAGCGCAACCAACATGAGCCCCAACAACCCGTTAATGGCTGCTGTAAGGCCTCTAGTGAAGTTGAGTCCTTATAGGCCATTTGGCCATTATTTGTTCTGCTCCAAGCGTGGTGGGATTTGGATAGAAAATCATTTTGCTGTGTTTTCCTTTCTTTATTACGCCCTGCAATTTTCAGATGCTGCCCTGCAAATTTCAGATGCTAGTTGTGACGAATTCATCTTGGAGCACGTTGGTTATTCAAATAGCTTGCCCAGTGTCCTGCAAAATATAGTGAAGTTGAATGAGCTTTCAGAAATTCCTTTGTCGGAAACAGGATCAAACTATCAAGACAGCAGGACAATACAACTGGAAGCTCTTGGGCTTGGAATTCAGAATTGCCCAGCAAGACTTGCCCTCAGAGCTGCGGGACAATTTTCGAAGCAGCAGAGGGAGAACCTGACCAAATTGGAGAATGAAGTAAAAGGAAAGATAGAAGTGGCCATCAAAGAAATAGAAGAGTATCGTGCGCAGTGTCTCAGAAATGGCACTGGTTACTACGACTCGTTCAAAAAGAAGCAACATAGAACAGACTTTGATGCTAACCTTAACAGGCTGAAGCTGGCAGGCTGGTTCGACGAAATCATAACGATGATCAGCAAGGATGAGTTACCGGACGATTTCCAGTGTAGTGAAGTGTGGATAAGACTGGGCACTGACTACAGGCTACTAGTTGAGCCACTGGACATCGCGAATTATTACAGGTTGGGAAAAAACGAAGACTCTGGGCCTTATCTCAGAAATGCCAGGCCTCGTCGTTATACAATTCTCCAAAAGTGGTTGGAAGAAAATAATGTGATTCAACAGCAGCAGCCATCCCCTACAGGCTCTGATCAGCCCACGATGCTCACTCAAGACTCCTGTCTCTGGGCTCATGTTGAAGAAATTGCATGTTTAAGGCTTGCTAATAATGCAGGGGGTCATGAAAACTCCATAGCAGGATTGGAAAAGTCACTGAGGCCTTTGATTGATTCCAATGGTTTGTCTATGGAAGAACTTGTGGCTGGCAACTCTACCTTCAACAGTGTGGTCAAGTGGCTGTGGGCAAACATGACTCCACTGCAGAAATCAACCTCTCCCATCTCCGATGTTATTGGCAGGCACCCAGAACTGATGAACTAATCATGTAGATGATGTGAGTAGCCATTGCACAAGTAGTACATATTAGAGTAGTCTTGCTGTTTCTGTTGCTTTCTATACATTAGAACAAAGGTATTTCTCTTCACAATATCTTAAAGTTAAGATCAGCATTCACTCACATATATATAATGAGTGATGAGTACTGATTTGAAAGGGATGAAATGGTTTAATGGTTTTTGTATGAAATGGTTTTTATAAGTACTTATTTGAGTAGTCTGGTTATTTCAGTTGCATTATGTACACAAGGACTAAGATATATCTCCACACTCTGTTGATGCTAAGATCAGGGCTCATTCACATGTATATAATGAGTAGTACTGGTTTGAATATTGTTGTATTTCTGTTGCCAATGTATACAAGGAGTAAAGTTGTTTCTCTTTACAATATATTACTGTTAAGATCAGTACTCCAATGAGAAGGGGAGTTAAGTTCGGATTATCGTGAATAAAAAAAACCAGTTCATTTC

Fln Alignment:

sp_v1.1_unigene16508___TRLMGRSESFYSEN-LLGACNLSRNVYRSAGDDPSYLRADLNETTVAIAFRGILDPHVFQATASKFGECQSGFLEWLKDGNNQPAFLHQGSLNQFLYLLNNSRFQEEALLEYERGKNVLFTGHSMGGAIAALATLWMLDKHQQQHPGKPKSFFCITFGFPLIGDETLARGVRRKGWTDHFCHVVSGRDVISRVLLAPSISVSEALESFLPYLKRYLENAGDLHGSTDTPMEEALPQGSAEFVSTVLQYCSAVANYNSATNMSPNNPLMAAVRPLVKLSPYRPFGHYLFCSKRGGIWIENHFAVFSFLYYALQFSDAALQISDASCDEFILEHVGYSNSLPSVLQNIVKLNELSEIPLSETGSNYQDSRTIQLEALGLGIQNCPARLALRAAGQFSKQQRENLTKLENEVKGKIEVAIKEIEEYRAQCLRNGTGYYDSFKKKQHRTDFDANLNRLKLAGWFDEIITMISKDELPDDFQCSEVWIRLGTDYRLLVEPLDIANYYRLGKNEDSGPYLRNARPRRYTILQKWLEENNVIQQQQPSPTGSDQPTMLTQDSCLWAHVEEIACLRLANNAGGHENSIAGLEKSLRPLIDSNGLSMEELVAG--NSTFNSVVKWLWANMTPLQKSTSPISDVIGRHPELMN
A9NVM4_______________SRLMDGSQPLFSDSSLLGFCKLSHSFYRSGGDDPSYLRANISNDTVAFAFRGILDPRDFQATASKFGDSP---LEWMKDGNNQSASVHQGSLKQFLHLWNTSRLQEEARQEYEGGKTVVFTGHSMGGGIASLAALWMLNSQQQ--PGKPKSVFCITFGFPLIGDGTLARIVRRKGWTDQFCHVVLGHDVFSRVLLAPCISVREPLESLLPYLKRYPENVGDLLGSTDTTMEEALPEGSAELVSTVLQHSSAIANYSSATNMSPNNPLMAAVKSLVKLSPYRPFGHYVFCSRSGGIRTENHFAVLSILYYTLQ-------ISDGNCEEFILEHVGYGNILPSALQNTVKLNELSDLPLSEAGSNYQDSRTAQLEALGLGIQNCPARLSLRAAGQVLKQQRENVPKLENEVRGKIETAINEIEEYRRQCFRNGIGYYDSFKNKQNRSDFDANLNRLKLAGWWDEIIPMVDKDELPEDFQCSEEWITLGTHYRLLVEPLDIANYYRLGKNEDSGPYLKNGRPRRYTTLQKWLKEIEVTKQLQPSPTGIDQPTVLTQDSCLWAHVEEIACLMRPNNVRDQENLVAELENSVKALIGSNGLSMEELVAGNCNSTFNTVVKWLWTNMNAEKKASSPISYIIGRHPELIN

SNPs (tot: 4)

Position	A %	G %	T %	Probability
2078	25	75		0.996473
2082		25	75	0.996473
2158	75	25		0.996473
2211	20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain