SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16504

Length: 2035 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16504
AGCTAGTTGGTATCAACGCAGAGTACATGGGGGGCGGGCGAGGGAGTAAACGGACAACGCTTCTAGACGCTTCTCCTTTCCCCCACCCATCTCGTTCTCCACCTGCAGCCATTATTTGTGGTGGGGAAGGGCTTTGCGTTGGATCTATGATCGAGGATCTAAATTCAGTCAGCAGGGGCTGAATTTCGAGCTGGGAAGCTTTAGTAAATGGAAATTTCCTTTTTGTGCGGATTTTGGATTTCACGGGAATCTCCTGAAAGCCCTCAGGGAAGAAAGCGTTGCAGGGCGGATTTAGTTGACTATGCAGAAATCGTAAAGTGACAGGTGGCAGTGGTGTTGTGAGGCGAGACTTTGGTTCTGGGGCTGTAGAATTCCAGAGTCAGGCTGTGTGACGCCTAATACGGCGAGGAGATTGGCCGCGGGATTGAGGTGCCTTGTTAGCAAATGATGAAATAATGTCGTTTGCCTTGTTGCCTGGTTGACGTCAGCAAGGCCTGAAGGTGTTGGTGTTTCTTGTGGCCGGGTGGGGCTTGCGCTCTAGTGAAGATTTAAATGTGAAAATGAAGGACGTTAAGGATGATTGTTTTTACTCGGTTTTGGGTCTGGAGAAGACCTGCACGACCTCGGATGTCCGGTGCGCTTACAGGAAATTGGCCAAGAAATGGCATCCGGACAAGCTCAATGCCAAGGACTCTGCGGCAGCCGATTCTGGGACAGCGTCAGAGGCTGCAAAGATGCGATTTCAGGCCATTCAGGAGGCGTATTCTGTCCTTTCTGACAACAACAAACGCCTGATGTACGATGCAGGAGTTTATGATGATGATGACGATGAATTGGGAATGAGCTCCTTCGTGGGAGAAATTGCTACAATGATGGCAGGCTCAAAACAGCAGGACGATGCTCCAGAGAACCTTGATGAATTAAAGGCAATGTTTCTGAACATTGTCAATGATGATTATTGTAAACCAAGCACCAGTAATAAGAGGTCAAGTTCTTGCTTAAATGGAACCGTCGCTGGGAAACATCAGAAGGGCACAACTTCCTCATCTTGTGAATTTAATGAAGATTTCTTAATGAGTGGGTTGCGTTCTGATACTGGCTGCATTGGGGGTGATGGTGTAGATAGCCTTCAAGACCTAAAGGAGGTGTTCATGAACATAGTTGATCCAGAGTTTTATGCGTCTCCGTGTACTAGCAAAATGACATTTAGTATGTCATCGAACCAAAATGATAACAAAAATCATTGGATGAATGGACCAACTACTTTCGATGAGCTAGTAGCAGAAACCCTGTTTCCCGAAGGTGGAATGATGGGCACTATGTTGGACAGATCAGCATCAGGGAATAAAAGTAGTGTTGATTTATGTGGTGAGGTCCGCAAGACCACCTCTTCAGCAACAGTGGATAGCAGGCACAGCAAGAAACTCAAATTATGTCAGGAGCAGAGAGATGATTCTAATTCATTGTGGGAATCTGAGTTTACCTACCATTGGAGTTCAGGGTTTTTCTGAGTTTCTCATACATTAAAGATAGCAGCTTCTTTGGATCATGTAGTACCAATTTTTACCTTCCCGCTAAGAAAAAAAATGGGGGTGGTATATCATTCATTTCAAGGGTCCGTTCATTTATTAGCTTTTCTTAATTTAGTCTTTAAGAAAAAGAGGATCCTTGTCTGCATTGCTTTCTGAGTGAAGGCTTTAACCATTACCACATGGAGACATTCGTGTATGGTGTTAGGGGGAGTGTGATATGCTTTAAAGAAGCATTTCTAACGTCAAGTGTTAGGACAGGTAGTCTGGGATTGTTTGGAAAATCACTCTTTATCTGGTATCCCAATCACTCGTTGCATTTGGTTTGAGTATTCATTGCCTCTCTATTTATATAGTGGATGTTTAGAGATTCATGACATGGCCTGTACAGTATGATTGCTCTAGAATTTGCAGGAGAGCCCAGGAGTAGCTGGATTCTGTTGGCAAAACCTTTCTTGTATTTGAAGACTTTGGACTAAGTTCTGGACTATTTATATTTTTTTGGT

Ace file of the UniGene sp_v1.1_unigene16504

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heat shock protein binding	-	-	2.0e-19	40%
FL-Next	tr=Heat shock-like protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	40%
Blast2go	heat shock protein binding	-	-	7.7419e-23	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	7.7419e-23	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	7.7419e-23	60%
Blast2go	Heat shock protein DnaJ	IPR003095	-	7.7419e-23	60%
Blast2go	Heat shock protein DnaJ, conserved site	IPR018253	-	7.7419e-23	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q40868

Fln msg: your sequence is longer than subject: 317 - 158

Fln protein: MKDVKDDCFYSVLGLEKTCTTSDVRCAYRKLAKKWHPDKLNAKDSAAADSGTASEAAKMRFQAIQEAYSVLSDNNKRLMYDAGVYDDDDDELGMSSFVGEIATMMAGSKQQDDAPENLDELKAMFLNIVNDDYCKPSTSNKRSSSCLNGTVAGKHQKGTTSSSCEFNEDFLMSGLRSDTGCIGGDGVDSLQDLKEVFMNIVDPEFYASPCTSKMTFSMSSNQNDNKNHWMNGPTTFDELVAETLFPEGGMMGTMLDRSASGNKSSVDLCGEVRKTTSSATVDSRHSKKLKLCQEQRDDSNSLWESEFTYHWSSGFF*

Protein Length: 318

Fln nts: AGCTAGTTGGTATCAACGCAGAGTACATGGGGGGCGGGCGAGGGAGTAAACGGACAACGCTTCTAGACGCTTCTCCTTTCCCCCACCCATCTCGTTCTCCACCTGCAGCCATTATTTGTGGTGGGGAAGGGCTTTGCGTTGGATCTATGATCGAGGATCTAAATTCAGTCAGCAGGGGCTGAATTTCGAGCTGGGAAGCTTTAGTAAATGGAAATTTCCTTTTTGTGCGGATTTTGGATTTCACGGGAATCTCCTGAAAGCCCTCAGGGAAGAAAGCGTTGCAGGGCGGATTTAGTTGACTATGCAGAAATCGTAAAGTGACAGGTGGCAGTGGTGTTGTGAGGCGAGACTTTGGTTCTGGGGCTGTAGAATTCCAGAGTCAGGCTGTGTGACGCCTAATACGGCGAGGAGATTGGCCGCGGGATTGAGGTGCCTTGTTAGCAAATGATGAAATAATGTCGTTTGCCTTGTTGCCTGGTTGACGTCAGCAAGGCCTGAAGGTGTTGGTGTTTCTTGTGGCCGGGTGGGGCTTGCGCTCTAGTGAAGATTTAAATGTGAAA_-_ATGAAGGACGTTAAGGATGATTGTTTTTACTCGGTTTTGGGTCTGGAGAAGACCTGCACGACCTCGGATGTCCGGTGCGCTTACAGGAAATTGGCCAAGAAATGGCATCCGGACAAGCTCAATGCCAAGGACTCTGCGGCAGCCGATTCTGGGACAGCGTCAGAGGCTGCAAAGATGCGATTTCAGGCCATTCAGGAGGCGTATTCTGTCCTTTCTGACAACAACAAACGCCTGATGTACGATGCAGGAGTTTATGATGATGATGACGATGAATTGGGAATGAGCTCCTTCGTGGGAGAAATTGCTACAATGATGGCAGGCTCAAAACAGCAGGACGATGCTCCAGAGAACCTTGATGAATTAAAGGCAATGTTTCTGAACATTGTCAATGATGATTATTGTAAACCAAGCACCAGTAATAAGAGGTCAAGTTCTTGCTTAAATGGAACCGTCGCTGGGAAACATCAGAAGGGCACAACTTCCTCATCTTGTGAATTTAATGAAGATTTCTTAATGAGTGGGTTGCGTTCTGATACTGGCTGCATTGGGGGTGATGGTGTAGATAGCCTTCAAGACCTAAAGGAGGTGTTCATGAACATAGTTGATCCAGAGTTTTATGCGTCTCCGTGTACTAGCAAAATGACATTTAGTATGTCATCGAACCAAAATGATAACAAAAATCATTGGATGAATGGACCAACTACTTTCGATGAGCTAGTAGCAGAAACCCTGTTTCCCGAAGGTGGAATGATGGGCACTATGTTGGACAGATCAGCATCAGGGAATAAAAGTAGTGTTGATTTATGTGGTGAGGTCCGCAAGACCACCTCTTCAGCAACAGTGGATAGCAGGCACAGCAAGAAACTCAAATTATGTCAGGAGCAGAGAGATGATTCTAATTCATTGTGGGAATCTGAGTTTACCTACCATTGGAGTTCAGGGTTTTTCTGA___GTTTCTCATACATTAAAGATAGCAGCTTCTTTGGATCATGTAGTACCAATTTTTACCTTCCCGCTAAGAAAAAAAATGGGGGTGGTATATCATTCATTTCAAGGGTCCGTTCATTTATTAGCTTTTCTTAATTTAGTCTTTAAGAAAAAGAGGATCCTTGTCTGCATTGCTTTCTGAGTGAAGGCTTTAACCATTACCACATGGAGACATTCGTGTATGGTGTTAGGGGGAGTGTGATATGCTTTAAAGAAGCATTTCTAACGTCAAGTGTTAGGACAGGTAGTCTGGGATTGTTTGGAAAATCACTCTTTATCTGGTATCCCAATCACTCGTTGCATTTGGTTTGAGTATTCATTGCCTCTCTATTTATATAGTGGATGTTTAGAGATTCATGACATGGCCTGTACAGTATGATTGCTCTAGAATTTGCAGGAGAGCCCAGGAGTAGCTGGATTCTGTTGGCAAAACCTTTCTTGTATTTGAAGACTTTGGACTAAGTTCTGGACTATTTATATTTTTTTGGT

Fln Alignment:

sp_v1.1_unigene16504___FYSVLGLEKTCTTSDVRCAYRKLAKKWHPDKLNXXXXXXXXXXXXXXXXXMRFQAIQEAYSVLSDNNKRLMYDAGVYXXXXXELGMSSFVGEIATMMAGSKQQDDAPENLDELKAMFLNIVNDDY
Q40868_______________FYSILGVNKDSSSAEIRSAYRKLAMKWHPDKWSTDPSSSETAK-------LRFQQIQEAYSVLSDDTKRALYDAGMYEPSEDMDAFCDFLDELSSLIATVKVQSNKDDELLQLQEMFTKMLEEDW

SNPs (tot: 3)

Position	C %	G %	T %	Probability
1202		10	90	0.90298
1393		6	93	0.999453
1839	57		42	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
814	826	ATG ATG ATG ATG A	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain