SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16502

Length: 1177 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16502

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3511 domain containing protein	-	-	2.0e-22	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	protein	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF3511	IPR021899	-	0.0	75%

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
309			16	83	0.994512
310			83	16	0.994512
541			96	3	0.989722
547	94		1		0.941977
550		3		96	0.990463
607		6		93	1.0
610	4	95			0.999986
611		4		95	0.999986
613	95			4	0.999986
614	95			4	0.999986
620	95			4	0.999987
628		4	95		0.999989
806	96		3		0.993591
807			96	3	0.993591
814	96			3	0.993591
818	96	3			0.993591
823	3	1		94	0.964041
826		4		96	0.99411
931		9		90	0.999872
962		11		88	0.923564
965	88		11		0.923564
967			11	88	0.923564
968	11			88	0.923564
969			11	88	0.923564
971	88		11		0.923564
972	11			88	0.923564
973		11		88	0.923564
975	88		11		0.923564
976			11	88	0.923564
978		11		88	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
378	397	TCAGCC TCAGCC TCAGCC TC	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain