SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16499

Length: 2092 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16499
CGTCGTGACCTTGGCTGTCACTCATCTCTGTCTCCCTGCCATTGTTGCAATTCTCTGCGCAGATCCACCTGCGCTCTCATTGGATTCGCATTTTCCTCGTTTTTCCCGATCGATTGATTAGTTTTTGAGGTCACGGCTGTGCGGATATCTGAGCATCCAGGGTTTAAGGAATTGGAGATCTGAAAAGGCCAGGGCCAGAATGGAGCTCTTTTACTATGTCGTTTTTGGAGTACTGACCGCCATTGTGGCAGTGTTTGAGCTCAGCAAGAGCAACAAAGATCGAATTACGACTCCTTCAGCGTTCAATTCGTTCAAGAACAATTATCTCGTGGTTTACAGTCTTATGATGGCTGGAGATTGGTTACAAGGGCCCTACGTTTACTATCTTTACAGCACGTATGGTTTCGGCAAAGGAGATATTGGAAGACTCTTCATTGCAGGCTTCGGGTCATCTATGTTATTTGGCACGATTGTGGGATCTTTAGCTGATAAACAGGGTCGGAAGAGGGCTTGTATAACATACTGCATAACGTATATATTGAGTTGTATTACAAAGCATTCTCCTGAGTACAAAATATTGATGATTGGCCGTATTCTTGGAGGCATTGCCACATCTCTTTTATTTTCAGCTTTTGAATCATGGCTTGTTGCTGAACATTTCAAGAGGAGTTTTGATCCACAGTGGTTATCATTCACCTTTTCAAAGGCAATATTCCTTGGCAATGGTCTTGTAGCCATTATCTCTGGGTTGTTTGCCAATACCCTTGCTGACACTCTAGGCTTTGGTCCAGTTTCTCCGTTTGATGCTGCAGCATGCTTCTTAGCTATAGGGATGGCCATTATTTTCTCCACCTGGACAGAGAACTATGGAGATCCTTCAGAGAATAAGGATCTACTTACTCAGTTCAAGGGTGCTGCCACAGCTATTGCTTCAGATGAGAAGATTGCATTGTTGGGAGCTATACAGTCCTTATTTGAAGGTTCAATGTACACATTTGTATTTCTTTGGACACCTGCTCTGAGCCCAAATGAACAGGATATTCCTCATGGATTCATATTTGCAACATTTATGTTGTCTTCAATGCTGGGAAGTTCCCTTGCCTCTAGACTCCTGGCCCGCCAAACAGTCAAGGCGGAGAGCTACATGCAGATTGTATTCCTTGTTGCTGCAGGATCCTTCCTCCTCCCTCTCATAACTACCTTCCTTTTAGAGCCCAGCACAGAAAAAGGTGGAAGCATTACACCAGGAGGGCGTCTCCAGCTTCTTGGTTTCTGTGTGTTTGAGGCCTGTGTGGGAATTTTCTGGCCCTCGATTATGAAAATGCGATCACAATACATTCCTGAGGAGTCTAGGAGCACAATTATGAACTTCTTCCGGATACCTTTGAACATATTTGTCTGTGTTGTGCTTTACAATGTCAATGCCTTCCCAATCACAGTCATGTTTGGTATGTGTGCCATCTTCCTCTTCATGGCATCAGTTCTCCAAAGGCGGCTCATGGTTGTTGCAGAGAGTCACAAGACAAAATCTCTAGATACTTGGGGTGCAACCAAGGAGCGGGATACAGAGGCAGAGCCCCTCAATCTCTGAAATGAAGAAGTTTTGGAGAAGGTAACTTGAAATATTTGCATGGGTTGTGAAAAGAGTCATCGACAATTCCCTTGCAAAAATTGTATTCTTGGGCTTGGCCCATGAACTGTTTCTGCTAAATCATTTTGTCACATAAAATAATAGGCAGTTTTATTCATCTATTGGAGAAGGTAAAGAACTTATTCATTGTAGAACTTCAGTTGGAGATATTAATGTTTTTTGTCTAACCGATTAAAGATCCCTCGGTAGACAATTATTATAAGGTGTAATTTTGTTGTGGAATTTTATTTTTCAACAGTCCTGAACCCTGGCTGATCAGAGGACAAGTGGTATACTAACTAGGCTTTATTTCAACCAATGGTTATCTAGGTAAGGTAAATTATCTGCTCGCTCCTTTTTGCTCAGCAGTTTGGTGTAGAGCCAAGAGCTCTGTTTGTAACTCCAATGATTTATTAATTAACTCACCATGGTCCACTAGGTGTGTGAAAAGTTCTGTTAGTT

Ace file of the UniGene sp_v1.1_unigene16499

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF791 multi-domain protein	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	at4g27720 t29a15_210	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF791	IPR008509	-	0.0	90%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPG0

Fln msg:

Fln protein: MELFYYVVFGVLTAIVAVFELSKSNKDRITTPSAFNSFKNNYLVVYSLMMAGDWLQGPYVYYLYSTYGFGKGDIGRLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCITKHSPEYKILMIGRILGGIATSLLFSAFESWLVAEHFKRSFDPQWLSFTFSKAIFLGNGLVAIISGLFANTLADTLGFGPVSPFDAAACFLAIGMAIIFSTWTENYGDPSENKDLLTQFKGAATAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEQDIPHGFIFATFMLSSMLGSSLASRLLARQTVKAESYMQIVFLVAAGSFLLPLITTFLLEPSTEKGGSITPGGRLQLLGFCVFEACVGIFWPSIMKMRSQYIPEESRSTIMNFFRIPLNIFVCVVLYNVNAFPITVMFGMCAIFLFMASVLQRRLMVVAESHKTKSLDTWGATKERDTEAEPLNL*

Protein Length: 465

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCTGTCTCCCTGCCATTGTTGCAATTCTCTGCGCAGATCCACCTGCGCTCTCATTGGATTCGCATTTTCCTCGTTTTTCCCGATCGATTGATTAGTTTTTGAGGTCACGGCTGTGCGGATATCTGAGCATCCAGGGTTTAAGGAATTGGAGATCTGAAAAGGCCAGGGCCAGA_-_ATGGAGCTCTTTTACTATGTCGTTTTTGGAGTACTGACCGCCATTGTGGCAGTGTTTGAGCTCAGCAAGAGCAACAAAGATCGAATTACGACTCCTTCAGCGTTCAATTCGTTCAAGAACAATTATCTCGTGGTTTACAGTCTTATGATGGCTGGAGATTGGTTACAAGGGCCCTACGTTTACTATCTTTACAGCACGTATGGTTTCGGCAAAGGAGATATTGGAAGACTCTTCATTGCAGGCTTCGGGTCATCTATGTTATTTGGCACGATTGTGGGATCTTTAGCTGATAAACAGGGTCGGAAGAGGGCTTGTATAACATACTGCATAACGTATATATTGAGTTGTATTACAAAGCATTCTCCTGAGTACAAAATATTGATGATTGGCCGTATTCTTGGAGGCATTGCCACATCTCTTTTATTTTCAGCTTTTGAATCATGGCTTGTTGCTGAACATTTCAAGAGGAGTTTTGATCCACAGTGGTTATCATTCACCTTTTCAAAGGCAATATTCCTTGGCAATGGTCTTGTAGCCATTATCTCTGGGTTGTTTGCCAATACCCTTGCTGACACTCTAGGCTTTGGTCCAGTTTCTCCGTTTGATGCTGCAGCATGCTTCTTAGCTATAGGGATGGCCATTATTTTCTCCACCTGGACAGAGAACTATGGAGATCCTTCAGAGAATAAGGATCTACTTACTCAGTTCAAGGGTGCTGCCACAGCTATTGCTTCAGATGAGAAGATTGCATTGTTGGGAGCTATACAGTCCTTATTTGAAGGTTCAATGTACACATTTGTATTTCTTTGGACACCTGCTCTGAGCCCAAATGAACAGGATATTCCTCATGGATTCATATTTGCAACATTTATGTTGTCTTCAATGCTGGGAAGTTCCCTTGCCTCTAGACTCCTGGCCCGCCAAACAGTCAAGGCGGAGAGCTACATGCAGATTGTATTCCTTGTTGCTGCAGGATCCTTCCTCCTCCCTCTCATAACTACCTTCCTTTTAGAGCCCAGCACAGAAAAAGGTGGAAGCATTACACCAGGAGGGCGTCTCCAGCTTCTTGGTTTCTGTGTGTTTGAGGCCTGTGTGGGAATTTTCTGGCCCTCGATTATGAAAATGCGATCACAATACATTCCTGAGGAGTCTAGGAGCACAATTATGAACTTCTTCCGGATACCTTTGAACATATTTGTCTGTGTTGTGCTTTACAATGTCAATGCCTTCCCAATCACAGTCATGTTTGGTATGTGTGCCATCTTCCTCTTCATGGCATCAGTTCTCCAAAGGCGGCTCATGGTTGTTGCAGAGAGTCACAAGACAAAATCTCTAGATACTTGGGGTGCAACCAAGGAGCGGGATACAGAGGCAGAGCCCCTCAATCTCTGA___AATGAAGAAGTTTTGGAGAAGGTAACTTGAAATATTTGCATGGGTTGTGAAAAGAGTCATCGACAATTCCCTTGCAAAAATTGTATTCTTGGGCTTGGCCCATGAACTGTTTCTGCTAAATCATTTTGTCACATAAAATAATAGGCAGTTTTATTCATCTATTGGAGAAGGTAAAGAACTTATTCATTGTAGAACTTCAGTTGGAGATATTAATGTTTTTTGTCTAACCGATTAAAGATCCCTCGGTAGACAATTATTATAAGGTGTAATTTTGTTGTGGAATTTTATTTTTCAACAGTCCTGAACCCTGGCTGATCAGAGGACAAGTGGTATACTAACTAGGCTTTATTTCAACCAATGGTTATCTAGGTAAGGTAAATTATCTGCTCGCTCCTTTTTGCTCAGCAGTTTGGTGTAGAGCCAAGAGCTCTGTTTGTAACTCCAATGATTTATTAATTAACTCACCATGGTCCACTAGGTGTGTGAAAAGTTCTGTTAGTT

Fln Alignment:

sp_v1.1_unigene16499___MELFYYVVFGVLTAIVAVFELSKSNKDRITTPSAFNSFKNNYLVVYSLMMAGDWLQGPYVYYLYSTYGFGKGDIGRLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCITKHSPEYKILMIGRILGGIATSLLFSAFESWLVAEHFKRSFDPQWLSFTFSKAIFLGNGLVAIISGLFANTLADTLGFGPVSPFDAAACFLAIGMAIIFSTWTENYGDPSENKDLLTQFKGAATAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEQDIPHGFIFATFXXXXXXXXXXXXXXXXXQTVKAESYMQIVFLVAAGSFLLPLITTFLLEPSTEKGGSITPGGRLQLLGFCVFEACVGIFWPSIMKMRSQYIPEESRSTIMNFFRIPLNIFVCVVLYNVNAFPITVMFGMCAIFLFMASVLQRRLMVVAESHKTKSLDTWGATKERDT
B8LPG0_______________MELFYYVVFGILSAIVAVFELSKNNKDRISTSSAFSSFKNNYLVVYSLMMAGDWLQGPYVYFLYSQYGFDKGDIGRLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCITKHSPQYKVLMIGRILGGIATSLLFSAFESWLVAEHFKRGFDAQWLSLTFSKAIFLGNGLVAILAGLFANTLADTLGFGPVSPFDAAACFLAIGMAIILSTWTENYGDPSESKDLLTQFKGAAIAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEQDIPHGFIFATFMLSSMLGSSLASRLMARQAVKVEGYMQIVFLVSSASFLLPLITTFILEPSTEKGGSITAGGRLQLLGFCVFEACVGIFWPSIMKMRSQYIPEESRSTIMNFFRIPLNIFVCVVLYNVNAFPITVMFGMCAIFLFMASVLQRRLMVVAESHKTKSLDTWVVTKERDT

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
956		66		33	1.0
1126	91		8		0.999807
1162		85		10	0.999793
1686	2		97		0.924243
1886			3	89	0.998606
2069	9	90			0.999842
2070	9			90	0.999872
2089	20		80		0.995493
2090	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain