SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16492

Length: 1135 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16492

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[G] COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family)	-	-	8.0e-24	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	plasma membrane intrinsic protein	-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	81%
Blast2go	transporter activity	GO:0005215	Molecular Function	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Major intrinsic protein	IPR000425	-	0.0	81%
Blast2go	Aquaporin-like	IPR023271	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9R4

Fln msg: Separated hits, possible frame ERROR between 346 and 385, Unexpected STOP codon in 5 prime region,

Fln protein: SSFLKYEEPPSAPLLDTNEFYLWSFYRAIIAEFVATLLFLYVTIATVIGNANDKSPCGGVGTLGIAWSFGGMIFVLVYCTAGISGGNxxxxxxxxxxxxxxLIFDLTKPYNVVAGGHLNPAVTFGLFVARKVTLNRAVLYMVAQCLGAICGAGMVKALQKTYYSSGGGGANSVSKGYGNETALTAEIVGTFVLVYTVFYATDIKSNARDAHVPALAPLSIGFAVFMVHLATIPVTGTGINPARSFGAAVIYGHKKSWDDHWIFWVGPLIGATVAAAFHKYVIRASLKWRSKEANHV*

Protein Length: 298

Fln nts: ATGGGGACTAATGTTATGCGCCTGAGTTGTCATTCTGATGATTTCCTCATCCACTGTTTGAGAACTGTGAGAAAGCCAGTAGTCTTCATTTTTGAAGTATGAAGAGCCCCCTTCTGCTCCGCTTTTAGACACAAACGAATTCTATCTCTGGTCGTTCTACAGAGCCATCATAGCCGAGTTCGTGGCCACGCTTTTGTTTCTATATGTGACAATTGCCACCGTCATCGGGAATGCTAACGATAAGAGTCCGTGTGGAGGCGTGGGTACCCTGGGTATCGCCTGGTCCTTCGGCGGAATGATCTTTGTCCTCGTGTATTGCACCGCTGGAATTTCAGGTGGTAATCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTGATATTTGATTTGACAAAACCATATAATGTTGTTGCAGGTGGGCATCTAAACCCCGCGGTCACGTTCGGGCTGTTTGTTGCTCGGAAAGTGACTCTGAATCGAGCAGTCTTGTACATGGTGGCACAGTGTTTGGGCGCAATCTGCGGGGCAGGGATGGTGAAAGCGTTGCAGAAAACTTACTATTCTAGTGGCGGGGGAGGAGCGAACTCAGTGTCGAAGGGATACGGCAATGAAACAGCTCTCACCGCAGAGATAGTTGGCACTTTCGTCTTGGTGTATACCGTCTTCTATGCCACCGACATCAAGAGCAACGCCCGCGACGCTCACGTTCCTGCTTTGGCTCCGCTTTCAATTGGATTTGCTGTATTCATGGTACACTTGGCAACCATTCCCGTCACTGGAACGGGCATCAATCCTGCCAGAAGCTTTGGAGCAGCTGTGATTTATGGCCATAAGAAATCCTGGGACGACCATTGGATCTTCTGGGTTGGTCCTCTTATTGGCGCTACGGTGGCTGCTGCGTTTCACAAATACGTTATCCGAGCATCCCTGAAATGGCGCAGCAAAGAAGCCAACCATGTTTAATGTAGAAACTGGACTTTGTTCACGCGGATGCATTTGTGTTGTAAAAATTGTGTTTGCTTTTAGATGTTTTGTAAGTTTTGAGGGGCCAATATTTCACGTACGCCGGATGTTAATCTCAGAATTGGCATCAATAGATGCTAAAATAAATTTGATACAACGGACT

Fln Alignment:

sp_v1.1_unigene16492___KYEEPPSAPLLDTNEFYLWSFYRAIIAEFVATLLFLYVTIATVIGNANDKSPCGGVGTLGIAWSFGGMIFVLVYCTAGISGGNLxxxxxxxxxxxxxLIFDLTKPYNVVAGGHLNPAVTFGLFVARKVTLNRAVLYMVAQCLGAICGAGMVKALQKTYYSSGGGGANSVSKGYGNETALTAEIVGTFVLVYTVFYATDIKSNARDAHVPALAPLSIGFAVFMVHLATIPVTGTGINPARSFGAAVIYGHKKSWDDHWIFWVGPLIGATVAAAFHKYVIRASLKWRSKEANHV
D5A9R4_______________QYEDPPPAPFLDRNEFYLWSFYRAIIAEFVATLLFLYVTIATVIGNANQKKPCGGVGTLGIAWSFGGMIFVLVYCTAGVSGGHIxxxxxxxxxxxxxMIFVLVYCTAGVSGGHINPAVTFGLFVARKMTLNRAVFYIVAQCLGAVCGAGMVKALQKNYYSAGGGGANTVKEGYASETALAAEIAGTFVLVYTVFCATDPKSNARDSHVPALAPLSVGFAVFMVHLATIPITGTGINPARSFGAAVIYGHKKSWNDHWIFWVGPLIGATIAAAFHKYVIRATLKPHSGEHNHV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain