SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16488

Length: 1913 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16488

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin alpha-2/alpha-4 chain n=118 Tax=Eukaryota RepID=TBA2_ARATH	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	alpha tubulin 1	-	-	99%

Source	ECs	Term	Type	Identity
Blast2go	Heterotrimeric G-protein GTPase.	EC:3.6.5.1	-	99%
Blast2go	Small monomeric GTPase.	EC:3.6.5.2	-	99%
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	99%
Blast2go	Signal-recognition-particle GTPase.	EC:3.6.5.4	-	99%

Source	GOs	Term	Type	Identity
Blast2go	microtubule-based movement	GO:0007018	Biological Process	99%
Blast2go	protein polymerization	GO:0051258	Biological Process	99%
Blast2go	GTP binding	GO:0005525	Molecular Function	99%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	99%
Blast2go	GTPase activity	GO:0003924	Molecular Function	99%
Blast2go	microtubule	GO:0005874	Cellular Component	99%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQU1

Fln msg:

Fln protein: MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGDEDEGEEY*

Protein Length: 452

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGAGTGCAATTCGGCCTTTCGATTTAGCTTTCTATTCCTTCCTGCTCCGCTTTCGTGCAGACGTCTTTGCATACGTCTTCACGAAGCTTTCTCGTTTCTGCGACATTTTTCCTCGGCTGCTTGATTTTTTTGTGCGCTTAACCGGGATTCTTTCCATTCTTTCGAGGGTTTTTTTCGAGGTTTCAAGGGTTTCAACAAGCGACA_-_ATGAGGGAGTGCATTTCGATCCACATTGGCCAGGCCGGTATTCAGGTCGGCAATGCCTGTTGGGAGCTTTACTGTCTCGAGCACGGCATCCAGCCTGATGGACAAATGCCGAGTGACAAGACCGTTGGCGGTGGAGATGATGCATTCAACACATTTTTCAGTGAGACAGGTGCCGGTAAGCATGTTCCTCGTGCCGTGTTTCTGGATCTGGAGCCAACTGTCATTGATGAAGTTCGAACCGGTACATATCGGCAGCTTTTTCACCCAGAGCAGCTGATCAGTGGCAAAGAAGATGCCGCCAACAACTTTGCTCGTGGCCATTATACCATTGGTAAGGAAATTGTGGATCTGTGCTTGGATCGAATCCGGAAGTTGGCAGACAACTGTACAGGCCTGCAAGGTTTCCTGGTCTTCCACGCTGTGGGAGGCGGTACCGGATCTGGTCTGGGGTCCCTTCTGTTGGAGAGGCTCTCTGTCGATTATGGAAAAAAATCGAAGTTGGGTTTCACTGTGTATCCATCTCCACAGGTCTCTACATCTGTAGTCGAGCCCTACAACAGCGTGCTGTCAACACACTCGCTGCTAGAGCATACAGATGTGGCCGTGCTGTTGGATAATGAGGCCATCTACGACATTTGTCGCCGTTCCCTGGACATCGAGCGCCCCACATACACTAACCTTAATAGACTTGTATCTCAGGTCATATCTTCCCTGACTGCCTCTCTGCGTTTTGATGGTGCTCTGAATGTTGATGTGACTGAGTTCCAAACGAACTTGGTGCCGTATCCTCGTATTCATTTCATGCTTTCCTCGTATGCTCCTGTGATCTCTGCTGAGAAGGCCTACCACGAACAGCTGTCAGTAGCTGAGATCACCAACAGTGCCTTCGAGCCATCGTCCATGATGGCTAAATGTGATCCACGCCATGGCAAATACATGGCCTGCTGTCTCATGTACCGAGGGGATGTTGTGCCCAAGGACGTGAACGCGGCAGTAGCTACCATTAAGACCAAGAGGACCATTCAGTTCGTGGATTGGTGTCCCACCGGGTTCAAGTGCGGTATCAATTATCAGCCTCCCACTGTGGTTCCTGGTGGGGATCTTGCCAAGGTCCAGAGGGCCGTCTGTATGATTTCCAACTCGACCAGTGTAGCAGAGGTCTTCTCTCGTATTGATCATAAGTTCGATCTCATGTACGCCAAGCGTGCCTTCGTGCACTGGTATGTGGGTGAGGGTATGGAGGAAGGAGAGTTCTCGGAGGCCCGTGAGGACTTGGCTGCTCTGGAGAAGGACTACGAAGAGGTCGGAGCAGAGTCTGCCGAGGGAGATGAGGATGAGGGCGAAGAGTACTGA___TCGATTATTAATTGCTATACTAAATGCTTGCTGCTAGTATACATATATATGTTGTTTGGATTTGGGACATGTGTTGGTTTTTATGAATGGTAACCAATACTCATTGGTTTGATCTCCGTAGTACTGGTGGTGATATCTACAATGATATTTCGTGCTTTACATTGCTGGATGTATCGACTCTCGCACTTGAATGCAGCTATTTATATCATGGTATCTGATATTGTATCCCCATGTTATCTGATATTGTATTTCGCTTCTGTTATAATCTCGCTCACCAAATGATGACTCTCGCACTTGAATGCATCTATTTATATCATGGTATTTGATACTGTA

Fln Alignment:

sp_v1.1_unigene16488___MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
C0PQU1_______________MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
426		33		33	0.997753
427			33	66	0.997452
430			33	66	0.997452
431			66	33	0.997452
434		33		66	0.997452
437			66	33	0.997452
442		66		33	0.997452
443	66		33		0.997452
444	66			33	0.997452
446	33			66	0.997452
447		33	66		0.997452
857	62			12	1.0
865			42	57	1.0
866	42			57	1.0
868		12		87	0.992554
871	37	62			1.0
873	37		62		1.0
874			37	62	1.0
875			37	62	1.0
878	16	83			0.994512
879		16		83	0.994512
1405		7		92	0.999664
1706		85		14	0.993533
1708			85	14	0.993533
1709	14		85		0.993533
1711			85	14	0.993533
1712		14	85		0.993533
1820		50	50		1.0
1834		50		50	1.0
1836		75		25	0.996473
1837	25			75	0.996473
1838	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain