SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16484

Length: 3504 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16484
CGTCGTGACCTTGGCTGTCACTCATTTCATTAATTTTCACTCATTTATTTGGATTTCTCGAAGCCTATAAACGTCGTGACCTTGGCTGTCACTCATTTGTGTTGAGAAACCCTAGCTTTCTCTTGTTTGTTTCTTCGGTCTCTAGTGCTTGCTAGTTTCTTCCAGTGGTTGTGGTTGCCTCTGTTAACTGCAGAAGCTCAGCGCATCTAAGGAGTAGGAGGTCCGAGAACTCGATCTCTAAGCCTCTCAATCTCAAAATGGCTCCTCGCCCCGCCAAGAAGGCCGCCGCAGCAAACCCTACTCCAAAGAAGGAGAAAGCTGGAGGTGCTAAGTCGAAGCAGACAACGCCAAAGGCCGATTCAGTGCCGGCTGTTACTGTTGAAGCCGAAGAGCCGAAGCAGTCACCAGCCAAACCTAATGGAGCAGAGGCGGCACCTGACGCCGACATAGTGATGGAGGACAATGCCAAACAGGAAGCTGAAGAAGACACTAAGGATGAAAAGTTAGATCTAGATGACAATGAGGATCAGGAGGATGAGACAGAAGAAAATCAAGATGGAGATGGCCAAGAAGGTGACGAGGAGGATGCAAAAGGTGAAGGAGAGGAGGCCGAGGCCCAGGACGATGGAGACGAGGGAGATTCACAAGTGGAGGAGGCCGAAGGTGCAGAGGATGAAGAGCACGAGGGTGTTGGAGAAGATGATGAACGTGAAATAAATGACATTCCTGCCCCCTTAAAGGACAGGCAGAAGCAAAAACAATTTGAAATTTTTGTAGGTGGCCTTGATAAGGAAGCTGATGAAGAGGATTTGAAGAAAGTTTTTGGTGCGGTGGGTGAAATTAAGGAAATACGAATGTCCAAGAATCCTACGTCTCAGAAGAACAGGGGATTTGCTTTCATACGTTATGAGACTATCGAAGAAGCAAAACGTGCCTTAACTGAACTGAAGAATGCTCAGGTTAAGGATAAGCGTTGTGGTGTGTCACCAAGCCAGGATAATAACACTCTTTACATGGGAAATATTTGCAAGACATGGACAAAGGATGTTGTGAGAGAAAAGCTGAATGAGTATGGAATTGAAAACATTGAAGAAATGTCCTTAATGGATGATCCAAAAAATGAGGGGCAAAATCGAGGCTTTGCATTCTTAGAGTTCACAAATCATCAATGTGCTATGACTGCGTACAAGCGCCTCCAAAAACGAGATGTTGTGTTAGGTTGTGACAGGAGTGCAAAGGTTGCGTTTGCTGAGTCTTCCATCCAGCCTGATGAGGAACAAATGGCACAGGTTAAGTCTGTTTTCCTTGATGGATTGCCCGCATCTTGGGATGAAGAGCGAGTTAAAGAGGAACTCAAGAAATTTGGTCAAATTGAGAAAGTACAATTATCGAAGAACATGGCCTCTGCCAAGCGTAAAGACTTTGGTTTTGTACATTTTGCTACTCGTGAAGAAGCTCAGGCTTGTGTTGATAGTCTCACTAACAGCGAGATTGGAGAGGAAGATAGTAAGGTAAAGGCTAATATTGCAAAGCCGCAACATAAGAGTAGGTTAGTTAAGCAAGGTGTTCGTGGAGGATATCGGGTTGGAGAAGTTAAAGCTGAAGGTAATAAGGGAAAGAAGTCTCGCAAAATGAGGAATCGTGGTCGTAATGATCGAAATCGTGGACGTGGACCTAAGAGTGACAAGAAAAAGGAGAAAACCACTGCACCTACAGAGAAGCAAGCTGATCCAAAACGTGCCACAAAGAACGATAATGTACCAAAGAAGAAAGGTGATCGTGATCAAGGTCCTAGGAAATCTAATGTTAGGGACCAGAATAAATCTCGGGGATCGTCAAGAACTGATACACGCAGGATCCCGTATGCTAATGATAGATATAGTCGCCATCTGGAACGTGTGCATAGTTATTTGGATGCGCCTAGCCGTCCTTATGGTGGAGTTTCTGGTTCAAAACGTCCATATTCTGCTCTGGATGATGTTCCAAGGTATGCAGAACCAGATTTAAGGCACTCGAGGGCACGCCTAGACTATGACGTTAGTGCTGGTGCTTCGCTTTATGGAGGCACCGGTTATGGCCGGCTTGGCAGAGCGCCCCAATCAGGTTACAGTGGTCAGCAATCTTATGGCTTATATGACACTCATCAAGCTGGCACACTTGGAGGTGCGGCAGTTGGTGGAATTTACTCTCCGGGCTACGGCACCAGTTCTTTGCCAGGCAGGACTGATATTGGAGGTGGTTCATATTCTTCTCTGTACGAAAGCCGGAGATCAGGCAGTGGATATCTGTTGGGCCGTGGCTCAAGAGGATATTACTAGAATATGAGTTTTTATGACAAGAGGCACTAGTCGGCCTAGGCTGGAGTAGATCTATATGCCTCTAGATCAATTATTTGGGTATCTTATGACCGGGCACAAGGAGAGATTATGCCTTATTGCATGGAGCTTCAGCTATCTGCCTTGAATGGCATCTTTGCCATACGAGATTTTATATCTCATGGCTATGACAGATATCTTAAGATTGCGATAGTAATGCAGTATTAGATTGAACATGTCTGATTTATGATATTAAGGATAGTTCTTTTGGAAGTGAGGGAGAATCTAGAGAAGATTCAACAAACGATTTTTGTTATAAGCTGGGATTTGTGTTAAACCTTCTTCAAAGTTCATTGTTGGATGTAAAGCTTTAAATCTTCTAGATGAATTGAGAACCAGCTTGAACTTTTTAAATTTAGCTCTTTGGGCATCCTGTTTTAAATATAATGGATGTTCGCTTGATGCCCTAAATGGAGCTTTAAGACGCTCGAGTGGCTTTCCTGAACGTACACGTTTTAGCCACTTCTAAGAAGAAAACTTTTTTGGGCATATAATGGTGAACTGATTTTTGAAGCTGGCAAGTTGTCTTCTCAGTTACATAATAGATATGAGATTTGATTTACATTCTGTCAAGTCATAATGGAGATGGTGTTCCCACTGTGATTCTTTGCTATTCATAGACACATCACCCTAGCCGCCAATAATTTCCCGAACTTAATCTTTCCCAAGGAAAAGTTTGGACTGGCCATGGGGACAGTGGCATCTACAAAAGATTAATGCTTGTAGATCATCCCACCATTTTAATTATCATGGGAGACACTTCACATGGGAGACACTTATCTCTCAATGTAGTGAACCTTGGATCTAGTGAGCTTAGAATTTCCCAGTTAGAGATTTGATGTCAAACAATGATAGGTACCAATGATTTCACTTTTTTGATTTATTAGGGCTGTTGGTGATCCAATTTTTTTATGAGATACTTAACTTGGATCCCGGCTTGCTTTACACTCTTTGAAGGGATTACGGTTGACTTAATCATGGAATTGAAAAAGGATTTGCTTATTTAAATGTTCACTCCAGCCAGACTCTGGACTCCTAAGATTTCAATTGTGGTTGGATGGAGTAAAGCTATCGAATTTTATGGAACAGTTTTGTGATTCAAATCCTTTGTTCCTTGAATTCTGTTGGA

Ace file of the UniGene sp_v1.1_unigene16484

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SM13_VITVI	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	rna binding	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	69%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	69%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMW5

Fln msg: your sequence is longer than subject: 687 - 219

Fln protein: MAPRPAKKAAAANPTPKKEKAGGAKSKQTTPKADSVPAVTVEAEEPKQSPAKPNGAEAAPDADIVMEDNAKQEAEEDTKDEKLDLDDNEDQEDETEENQDGDGQEGDEEDAKGEGEEAEAQDDGDEGDSQVEEAEGAEDEEHEGVGEDDEREINDIPAPLKDRQKQKQFEIFVGGLDKEADEEDLKKVFGAVGEIKEIRMSKNPTSQKNRGFAFIRYETIEEAKRALTELKNAQVKDKRCGVSPSQDNNTLYMGNICKTWTKDVVREKLNEYGIENIEEMSLMDDPKNEGQNRGFAFLEFTNHQCAMTAYKRLQKRDVVLGCDRSAKVAFAESSIQPDEEQMAQVKSVFLDGLPASWDEERVKEELKKFGQIEKVQLSKNMASAKRKDFGFVHFATREEAQACVDSLTNSEIGEEDSKVKANIAKPQHKSRLVKQGVRGGYRVGEVKAEGNKGKKSRKMRNRGRNDRNRGRGPKSDKKKEKTTAPTEKQADPKRATKNDNVPKKKGDRDQGPRKSNVRDQNKSRGSSRTDTRRIPYANDRYSRHLERVHSYLDAPSRPYGGVSGSKRPYSALDDVPRYAEPDLRHSRARLDYDVSAGASLYGGTGYGRLGRAPQSGYSGQQSYGLYDTHQAGTLGGAAVGGIYSPGYGTSSLPGRTDIGGGSYSSLYESRRSGSGYLLGRGSRGYY*

Protein Length: 688

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCATTAATTTTCACTCATTTATTTGGATTTCTCGAAGCCTATAAACGTCGTGACCTTGGCTGTCACTCATTTGTGTTGAGAAACCCTAGCTTTCTCTTGTTTGTTTCTTCGGTCTCTAGTGCTTGCTAGTTTCTTCCAGTGGTTGTGGTTGCCTCTGTTAACTGCAGAAGCTCAGCGCATCTAAGGAGTAGGAGGTCCGAGAACTCGATCTCTAAGCCTCTCAATCTCAAA_-_ATGGCTCCTCGCCCCGCCAAGAAGGCCGCCGCAGCAAACCCTACTCCAAAGAAGGAGAAAGCTGGAGGTGCTAAGTCGAAGCAGACAACGCCAAAGGCCGATTCAGTGCCGGCTGTTACTGTTGAAGCCGAAGAGCCGAAGCAGTCACCAGCCAAACCTAATGGAGCAGAGGCGGCACCTGACGCCGACATAGTGATGGAGGACAATGCCAAACAGGAAGCTGAAGAAGACACTAAGGATGAAAAGTTAGATCTAGATGACAATGAGGATCAGGAGGATGAGACAGAAGAAAATCAAGATGGAGATGGCCAAGAAGGTGACGAGGAGGATGCAAAAGGTGAAGGAGAGGAGGCCGAGGCCCAGGACGATGGAGACGAGGGAGATTCACAAGTGGAGGAGGCCGAAGGTGCAGAGGATGAAGAGCACGAGGGTGTTGGAGAAGATGATGAACGTGAAATAAATGACATTCCTGCCCCCTTAAAGGACAGGCAGAAGCAAAAACAATTTGAAATTTTTGTAGGTGGCCTTGATAAGGAAGCTGATGAAGAGGATTTGAAGAAAGTTTTTGGTGCGGTGGGTGAAATTAAGGAAATACGAATGTCCAAGAATCCTACGTCTCAGAAGAACAGGGGATTTGCTTTCATACGTTATGAGACTATCGAAGAAGCAAAACGTGCCTTAACTGAACTGAAGAATGCTCAGGTTAAGGATAAGCGTTGTGGTGTGTCACCAAGCCAGGATAATAACACTCTTTACATGGGAAATATTTGCAAGACATGGACAAAGGATGTTGTGAGAGAAAAGCTGAATGAGTATGGAATTGAAAACATTGAAGAAATGTCCTTAATGGATGATCCAAAAAATGAGGGGCAAAATCGAGGCTTTGCATTCTTAGAGTTCACAAATCATCAATGTGCTATGACTGCGTACAAGCGCCTCCAAAAACGAGATGTTGTGTTAGGTTGTGACAGGAGTGCAAAGGTTGCGTTTGCTGAGTCTTCCATCCAGCCTGATGAGGAACAAATGGCACAGGTTAAGTCTGTTTTCCTTGATGGATTGCCCGCATCTTGGGATGAAGAGCGAGTTAAAGAGGAACTCAAGAAATTTGGTCAAATTGAGAAAGTACAATTATCGAAGAACATGGCCTCTGCCAAGCGTAAAGACTTTGGTTTTGTACATTTTGCTACTCGTGAAGAAGCTCAGGCTTGTGTTGATAGTCTCACTAACAGCGAGATTGGAGAGGAAGATAGTAAGGTAAAGGCTAATATTGCAAAGCCGCAACATAAGAGTAGGTTAGTTAAGCAAGGTGTTCGTGGAGGATATCGGGTTGGAGAAGTTAAAGCTGAAGGTAATAAGGGAAAGAAGTCTCGCAAAATGAGGAATCGTGGTCGTAATGATCGAAATCGTGGACGTGGACCTAAGAGTGACAAGAAAAAGGAGAAAACCACTGCACCTACAGAGAAGCAAGCTGATCCAAAACGTGCCACAAAGAACGATAATGTACCAAAGAAGAAAGGTGATCGTGATCAAGGTCCTAGGAAATCTAATGTTAGGGACCAGAATAAATCTCGGGGATCGTCAAGAACTGATACACGCAGGATCCCGTATGCTAATGATAGATATAGTCGCCATCTGGAACGTGTGCATAGTTATTTGGATGCGCCTAGCCGTCCTTATGGTGGAGTTTCTGGTTCAAAACGTCCATATTCTGCTCTGGATGATGTTCCAAGGTATGCAGAACCAGATTTAAGGCACTCGAGGGCACGCCTAGACTATGACGTTAGTGCTGGTGCTTCGCTTTATGGAGGCACCGGTTATGGCCGGCTTGGCAGAGCGCCCCAATCAGGTTACAGTGGTCAGCAATCTTATGGCTTATATGACACTCATCAAGCTGGCACACTTGGAGGTGCGGCAGTTGGTGGAATTTACTCTCCGGGCTACGGCACCAGTTCTTTGCCAGGCAGGACTGATATTGGAGGTGGTTCATATTCTTCTCTGTACGAAAGCCGGAGATCAGGCAGTGGATATCTGTTGGGCCGTGGCTCAAGAGGATATTACTAG___AATATGAGTTTTTATGACAAGAGGCACTAGTCGGCCTAGGCTGGAGTAGATCTATATGCCTCTAGATCAATTATTTGGGTATCTTATGACCGGGCACAAGGAGAGATTATGCCTTATTGCATGGAGCTTCAGCTATCTGCCTTGAATGGCATCTTTGCCATACGAGATTTTATATCTCATGGCTATGACAGATATCTTAAGATTGCGATAGTAATGCAGTATTAGATTGAACATGTCTGATTTATGATATTAAGGATAGTTCTTTTGGAAGTGAGGGAGAATCTAGAGAAGATTCAACAAACGATTTTTGTTATAAGCTGGGATTTGTGTTAAACCTTCTTCAAAGTTCATTGTTGGATGTAAAGCTTTAAATCTTCTAGATGAATTGAGAACCAGCTTGAACTTTTTAAATTTAGCTCTTTGGGCATCCTGTTTTAAATATAATGGATGTTCGCTTGATGCCCTAAATGGAGCTTTAAGACGCTCGAGTGGCTTTCCTGAACGTACACGTTTTAGCCACTTCTAAGAAGAAAACTTTTTTGGGCATATAATGGTGAACTGATTTTTGAAGCTGGCAAGTTGTCTTCTCAGTTACATAATAGATATGAGATTTGATTTACATTCTGTCAAGTCATAATGGAGATGGTGTTCCCACTGTGATTCTTTGCTATTCATAGACACATCACCCTAGCCGCCAATAATTTCCCGAACTTAATCTTTCCCAAGGAAAAGTTTGGACTGGCCATGGGGACAGTGGCATCTACAAAAGATTAATGCTTGTAGATCATCCCACCATTTTAATTATCATGGGAGACACTTCACATGGGAGACACTTATCTCTCAATGTAGTGAACCTTGGATCTAGTGAGCTTAGAATTTCCCAGTTAGAGATTTGATGTCAAACAATGATAGGTACCAATGATTTCACTTTTTTGATTTATTAGGGCTGTTGGTGATCCAATTTTTTTATGAGATACTTAACTTGGATCCCGGCTTGCTTTACACTCTTTGAAGGGATTACGGTTGACTTAATCATGGAATTGAAAAAGGATTTGCTTATTTAAATGTTCACTCCAGCCAGACTCTGGACTCCTAAGATTTCAATTGTGGTTGGATGGAGTAAAGCTATCGAATTTTATGGAACAGTTTTGTGATTCAAATCCTTTGTTCCTTGAATTCTGTTGGA

Fln Alignment:

sp_v1.1_unigene16484___KDRQKQKQFEIFVGGLDKEADEEDLKKVFGAVGEIKEIRMSKNPTSQKNRGFAFIRYETIEEAKRALTELKNAQVKDKRCGVSPSQDNNTLYMGNICKTWTKDVVREKLNEYGIENIEEMSLMDDPKNEGQNRGFAFLEFTNHQCAMTAYKRLQKRDVVLGCDRSAKVAFAESSIQPDEEQMAQV
A9NMW5_______________KERRKRKEFEVFVGGLDKDAAEEDLRKVFSEVGEVVEIRLMMNAQTQKNKGFAFIRYATVEQAKRACTELKNPQVNGKVCGISPSQDNDTLFLGNICKTWTKEALREKLKSFSIDNIEDLTLVEDPENEGMNRGIAFIEFSARSDAMNAYKRLQKRDVVLGTDRTAKVSFAETFVDPDEEVMAQI

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
104	1		12	85	1.0
105			10	89	1.0
108		1	3	94	0.947029
489	97			2	0.962263
490	96	3			0.999962
495	97			2	0.967822
496		97	2		0.967822
504	96	3			0.983282
551			95	4	0.995055
552	93		2	4	0.979066
553	91	6	2		0.999995
555	95	4			0.99692
557	95		4		0.99692
558	90		2		0.999997
560		95	4		0.99692
562	95		4		0.997494
565		4		95	0.997494
568	92	5	2		0.991359
1514	96			3	0.989722
1601	13		86		1.0
2435	90		10		0.90298
2476	5	94			1.0
2516	43		56		1.0
2585		13	86		1.0
2743		85		14	0.993533
2751	16		83		0.994512
2759		25		75	0.996473
2841	33			66	1.0
3142	87		12		0.992554
3144			12	87	0.992554
3146		87	12		0.992554
3149	87	12			0.992554
3151			87	12	0.992554
3154	75	12		12	0.975346
3156	87			12	0.992554
3157		87		12	0.992554
3161		12		87	0.992554
3288			25	75	0.996473
3290	25			75	0.996473
3294	25			25	0.995533
3358	80		20		0.995493
3405		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain