SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16483

Length: 1520 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16483

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NYS4_PICSI	-	-	95%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	proteasome epsilon chain precursor	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Threonine endopeptidases.	EC:3.4.25.-	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	88%
Blast2go	threonine-type endopeptidase activity	GO:0004298	Molecular Function	88%
Blast2go	cytoplasm	GO:0005737	Cellular Component	88%
Blast2go	proteasome core complex	GO:0005839	Cellular Component	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase T1A, proteasome beta-subunit	IPR000243	-	88%
Blast2go	Proteasome, subunit alpha/beta	IPR001353	-	88%
Blast2go	Proteasome, beta-type subunit, conserved site	IPR016050	-	88%
Blast2go	Proteasome B-type subunit	IPR023333	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ27

Fln msg:

Fln protein: MKLDLSGLEPATLHQLSNDDLCDVFTPGPSFKIPNDADFDGFQKAAMQMVKPAKGTTTLAFIFKEGIMVAADSRASMGGYISSQSVKKIIEINPYLLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYRWDMPVEEAAELARRSIYHATFRDGASGGVASVYYVGPQGWKKLSGDDVAELHYNYYPVTENVVEQEMVEVSA*

Protein Length: 273

Fln nts: ATGGGGAGAGTAATTGAAATGAAAATAGGGAAATGCCTAAATATTTTTAAAAGATCGACTTTATTCTTAAATAGGCGGTTCTCTTCTTGCTTGCGAGGATTCTGGCACGAATTTGTACCATCAGAAGGTTCGGCTGAGCACAGTTTTTGCTTCTAATACCCGGCTCCGCTTGAATCTGAATCTCACATTGTTTTCAGCTTATTTACGGGAGTTTCTGCGAATTTGGTGGTGTTTTGATTGGTTTTTGTCCACTCGACCGTTTTTTTTCTCTGGACCACTGTATATGTTCGGGTTCTCGTTCTGAGTTGCAAG_-_ATGAAGCTTGACTTGAGTGGCCTTGAGCCTGCAACTCTCCATCAGCTGTCAAATGATGATCTTTGTGATGTTTTCACTCCAGGTCCATCATTCAAGATTCCTAATGATGCAGATTTTGACGGCTTTCAAAAGGCAGCAATGCAAATGGTGAAACCAGCAAAAGGGACGACAACATTGGCTTTTATATTCAAGGAAGGAATCATGGTTGCTGCTGATTCTCGTGCGAGCATGGGAGGATACATTTCATCACAATCTGTGAAGAAAATTATTGAAATCAATCCTTATTTACTTGGTACTATGGCTGGGGGTGCAGCTGATTGCCAATTCTGGCACAGAAACCTGGGCATTAAGTGTCGGTTACATGAGCTGGCAAACAAGCGGAGAATATCAGTGACAGGCGCTTCTAAATTGTTGGCAAATATCCTCTATTCATATAGAGGAATGGGCCTGTCAGTGGGTACAATGATTGCCGGATGGGATGAAACGGGCCCTGGTCTATATTATGTAGACAGTGAAGGAGGAAGACTTAAGGGGACACGTTTTTCTGTTGGATCTGGTTCACCGTATGCTTACGGTGTCCTGGACAGTGGGTACCGCTGGGATATGCCAGTGGAAGAAGCTGCAGAACTAGCTCGACGCTCTATATACCACGCAACATTTCGTGATGGTGCCAGTGGGGGTGTGGCAAGTGTGTACTATGTGGGTCCGCAAGGTTGGAAGAAATTATCTGGTGATGATGTAGCGGAACTTCATTACAATTACTATCCAGTCACAGAAAATGTCGTAGAGCAGGAGATGGTTGAAGTCAGTGCTTGA___AAGCATCTTATGCATTGCACCATGCAACTTGAGTTTACTGGCTTACTTTACAAACTACTGCATGTTTTGTATGCAACTTTTCTCGTTCTTTATTATTGGGAAAGGGAAAACCTTGATTATTAATTGGCCTTTCTCATTATAAGGAGGTTTCTGTCAGAAACAATCTATATTTTCAATCATAGAAATTTTCAATTACTAGTTAAGCCTGACTTTCGAAATAATCGATGATACGCTAGTGTAAACCATACAAATTTTAGGCTTCAGTTACTGGATTCTCCATCTCTTTGCATGAGGTTGTGTATGGTGTGCATGATATGAAGGTCAGTGGAAACACTGCTCGTGGTGATGAAAATCTACAGGGGTTTGACCTCAGCTAATGATTTTCCATGAGT

Fln Alignment:

sp_v1.1_unigene16483___MKLDLSGLEPATLHQLSNDDLCDVFTPGPSFKIPNDADFDGFQKAAMQMVKPAKGTTTLAFIFKEGIMVAADSRASMGGYISSQSVKKIIEINPYLLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYRWDMPVEEAAELARRSIYHATFRDGASGGVASVYYVGPQGWKKLSGDDVAELHYNYYPVTENVVEQEMVEVSA
A9NZ27_______________MKLDLSGLEPATLHQLSNDNLCDVFSPTPSFEIPNDADFDGFQKAAVQMVKPAKGTTTLAFIFKEGIMVAADSRASMGGYISSQSVKKIIEINPYLLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYRWDMPVEEAAELARRSIYHATFRDGASGGVASVYYVGPQGWKKLSGDDVAELHFNYYPVTENVVEQEMVEVTA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
989	3		96		0.993591
991	1		90		1.0
1091	92	2			0.990091
1294	71		28		1.0
1295	35			64	1.0
1354		62		37	1.0
1385	42			57	1.0
1419		80		20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain