SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16477

Length: 754 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16477

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium binding protein n=1 Tax=Pinus taeda RepID=O22429_PINTA	-	-	84%
FL-Next	tr=Calcium binding protein; Pinus taeda (Loblolly pine).	-	-	71%
Blast2go	polcalcin	-	-	56%

Source	GOs	Term	Type	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	56%
Blast2go	cytoplasm	GO:0005737	Cellular Component	56%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	56%

Source	InterPros	Term	Type	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	56%
Blast2go	EF-hand-like domain	IPR011992	-	56%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	56%
Blast2go	EF-hand	IPR018248	-	56%
Blast2go	EF-HAND 2	IPR018249	-	56%

Full-Lengther Next Prediction

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
205			87	12	0.992554
210		85	14		0.993533
218	85			14	0.993533
232			90	10	0.90298
234			88	11	0.923564
236		11		88	0.923564
237	11		88		0.923564
242	88			11	0.923564
244		12	87		0.992554
245	87	12			0.992554
261	83			16	0.994512
264		16		83	0.994512
272			16	83	0.994512
276		83		16	0.994512
277			20	80	0.995493
279		20	80		0.995493
304	66		33		0.997452
372		66	33		0.997452
381	66		33		0.997452
418	33		66		0.997452
444	66		33		0.997452
464	33		66		0.997452
549		33		66	0.997452
559	33		66		0.997452
560	33	33			0.997753
562	33		66		0.997452
570		66		33	0.997452
629	75	25			0.996473
644	76		23		1.0
652	76	23			1.0
653	23			76	1.0
655	76	23			1.0
656		76		23	1.0
661		76	23		1.0
663			24	4	1.0
666		4		24	1.0
667	24	4			1.0
668	23			76	1.0
672	76			24	1.0
673	24		76		1.0
674		76		24	1.0
675		24	76		1.0
676		76	24		1.0
677		16		83	1.0
680	73			26	1.0
682			26	73	1.0
683		73		26	1.0
686	52			47	1.0
687	26	73			1.0
707		26	73		1.0
725		27	54	18	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
633	645	AATA AATA AATA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain