SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16464

Length: 1321 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16464

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen-specific protein SF3, putative	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	pollen-specific protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, LIM-type	IPR001781	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSQ9

Fln msg:

Fln protein: MAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEAIPRASRNDKMHENENRTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRLYCRHHSSQLFREKGNFSQLSKATPTKGVTENSDTDDK*

Protein Length: 195

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATTTAAATGCTTTTTTGATGGGCCGGTTACTCGCAAGATTATCAAGCGGGACTGTAGCCGAAGCTTTGAGAGGTTGAAATTCAGACCTTGCTCCCAACTGGTCTGCTGAAACAAAATCCATTATTGAGCTAGGTTTAGAATCGGGTTTGCTGGTCATCTGGGAGAGGCGATCTATTCAGCTTCGCAGGCCCCCGAAG_-_ATGGCGTTCGCCGGCACAACCCAGAAGTGCAAGGCATGTGAAAAGACGGTCTATTTGGTTGATCAATTGACAGCTGATAATTCTGTTTTTCACAAATCCTGTTTCCGCTGCCATCACTGCAATGGAACCTTAAAGCTTAGCAACTATTCGTCATTTGAGGGAGTTCTATATTGCAAACCTCATTTTGACCAGCTGTTTAAGAGAACAGGAAGTTTGGATAAAAGTTTTGAAGCCATTCCTAGAGCATCAAGAAATGACAAGATGCATGAGAATGAGAACAGGACACCTAGTAGGGTATCAGCATTGTTTTCCGGTACACAGGATAAATGTGTTGCATGTGGGAAGACAGTGTACCCCATTGAGAAGGTTGCTGTTGATGGTACATCATACCACCGACCTTGCTTCAAGTGCTGTCATGGTGGTTGTGTCATCAGCCCCTCAAATTATGTTGCTCATGAAGGCAGGCTATATTGTAGGCATCATAGCTCTCAACTTTTTAGGGAGAAAGGTAACTTCAGCCAGCTTTCAAAGGCAACACCTACAAAAGGGGTGACTGAGAACTCAGACACAGACGACAAGTGA___TCATTCGGGCCAGATTTTTGTTGAGAGAGTTGTAGTGTGTAATTGATTCATTTCATACATTTGATATGCAAGCCTGTACAATAGCCTGTGACTGTTAAGGGCATTCTTTTGTCTCCCTGTTGCTATTTGGGTTTCCGGTGTGTTCATTTTCACTTATTTTTGTGTTTTAGCTGGAGGAATTTGAGAGGGTAGAATTGTGTCATCGCTATGGCTTGTGCATGACTCATAAGCCAGCAGTTGAGACTTTTATTTATTAGTTATAGTACTATATCTTGTCGAGTTCTCAATAAAAGATAGTGTTATGCTGTTGGGCAGCATCCTAGAGTGTTTTGTAATGTAGGCATAATAGTCTCAATGTTTCTATAAGGTATTTGCCAATGTTTTTGTTGCAACATGTTTTGAGTTTTAGTTGCAAAAGATAGTGTTATGCTGTTGAACAGCATCCTAGAGTGCTTTGTAATGTAAACATAATAATCTCGATGTTTCTATAATAAGGTAATTTTCCAATTTTGCTTG

Fln Alignment:

sp_v1.1_unigene16464___MAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEAIPRASRNDKMHENENRTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRLYCRHHSSQLFREKGNFSQLSKATPTKGVTENSDTDDK
A9NSQ9_______________MAFAGTTQKCKACEKTVYLVDQLTADNSVYHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEAIPRASRNDKTQENESKTPNRVSTMFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRLYCRHHSSQLFREKGNFSQLAKGTPTKGVTEN--TDDK

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
120		66		33	0.997452
124		66	33		0.997452
839	96	3			0.991164
845	3			96	0.99245
846	96	3			0.99245
847	96	3			0.99245
851	96	3			0.99245
879		96	3		0.991164
886	96	3			0.991825
888	96			3	0.991825
890		96	3		0.991825
895		3	96		0.991825
904		3	96		0.993591
906			96	4	0.99411
908	96		4		0.99411
911	4	95			0.994598
915			4	95	0.995055
918		91		2	0.999993
1184	20			80	1.0
1186	20		80		1.0
1190	6			90	0.999997
1282		14		85	1.0
1304	50			25	0.995533
1308	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain