SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16437

Length: 572 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16437
CGTCGTGACCTTGGCTGTCACTCGTGTGACCTTGGCTTTTACGTCATTGGCTACTACTTTTGTAAAGAAACTGACTCTGTCCAGTCAGCAAATTGTGCCATTGATAGTTTCAGCAAACAGCAATGACTTGGCGTTAATGGTCAACTTGGTCAATGAGGGAAAAGTGAAAACAATTATAGATTCCAAATATCCCCTGGAAAAGGCAGCAGATGCGTGGGCAAAGAGCATGGATGGTCATGCCACAGGAAAGATTGTAGTAACATGTGGAGAGTAGAGTTTGTCGTGTACATTCTTGGACATGCATAGACGTCTAGGTTGACGTGTAAAATAGTGCATGGGAAATAAGCATGGTGGGCATCGAAACATTGTAGTAACATATAGAGAATAGCGTGTGGATGACGTAAGTTATTGTCAACAATGCTATCATTCTTATATGCTCATAAACCATATAAGATGATGATCAATAAGCAGATCAATGTATAGATATGGTTAGTCTATATTGGAACATATTTTATCGTCTCTCATGATTCACTAGAAAGGTAGTCTCTCTATTAATTATTGTAGCCGTTATC

Ace file of the UniGene sp_v1.1_unigene16437

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative quinone-oxidoreductase homolog, chloroplastic n=2 Tax=Arabidopsis RepID=QORH_ARATH	-	-	1.0e-18	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	protein	-	-	2.68192e-31	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	2.68192e-31	79%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	2.68192e-31	79%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	2.68192e-31	79%
Blast2go	vacuole	GO:0005773	Cellular Component	2.68192e-31	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.68192e-31	79%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	2.68192e-31	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	2.68192e-31	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD48

Fln msg: your sequence is shorter than subject: 91 - 333

Fln protein: VVTLAVTRVTLAFTSLATTFVKKLTLSSQQIVPLIVSANSNDLALMVNLVNEGKVKTIIDSKYPLEKAADAWAKSMDGHATGKIVVTCGE*

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTGTGACCTTGGCTTTTACGTCATTGGCTACTACTTTTGTAAAGAAACTGACTCTGTCCAGTCAGCAAATTGTGCCATTGATAGTTTCAGCAAACAGCAATGACTTGGCGTTAATGGTCAACTTGGTCAATGAGGGAAAAGTGAAAACAATTATAGATTCCAAATATCCCCTGGAAAAGGCAGCAGATGCGTGGGCAAAGAGCATGGATGGTCATGCCACAGGAAAGATTGTAGTAACATGTGGAGAGTAG___AGTTTGTCGTGTACATTCTTGGACATGCATAGACGTCTAGGTTGACGTGTAAAATAGTGCATGGGAAATAAGCATGGTGGGCATCGAAACATTGTAGTAACATATAGAGAATAGCGTGTGGATGACGTAAGTTATTGTCAACAATGCTATCATTCTTATATGCTCATAAACCATATAAGATGATGATCAATAAGCAGATCAATGTATAGATATGGTTAGTCTATATTGGAACATATTTTATCGTCTCTCATGATTCACTAGAAAGGTAGTCTCTCTATTAATTATTGTAGCCGTTATC

Fln Alignment:

sp_v1.1_unigene16437___SLATTFVKKLTLSSQQIVPLIVSANSNDLALMVNLVNEGKVKTIIDSKYPLEKAADAWAKSMDGHATGKIVVTCGE
D5AD48_______________SLASTFVKKLTLSSQQIVPFIVSGNSNDLAFMVNLVNEGKVKTIIDSKYPLEKAADAWAKSMDGHATGKIVVTFGE

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
123	50	50			1.0
125		50		50	1.0
126	50	50			1.0
127	50		50		1.0
140		50		50	1.0
142	50	50			1.0
153		20	80		0.995493
158	80		20		0.995493
162		20	80		0.995493
163			80	20	0.995493
164			80	20	0.995493
165	80		20		0.995493
166	80		20		0.995493
167	80	20			0.995493
168	80			20	0.995493
171		20	80		0.995493
173	80	20			0.995493
174	80			20	0.995493
175	80	20			0.995493
176	20	80			0.995493
216		11		88	0.923564
222	11		88		0.923564
223		11	88		0.923564
225	88			11	0.923564
226	88			11	0.923564
227	88		11		0.923564
229	88			11	0.923564
233		11		88	0.923564
234			88	11	0.923564
235		11	88		0.923564
264	90		9		0.999872

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain