SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16420

Length: 652 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16420

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RAD23 n=2 Tax=Pinaceae RepID=B5M6R6_PINSY	-	-	2.0e-30	91%
FL-Next	tr=RAD23; Pinus sylvestris var. mongolica.	-	-	0.0	93%
Blast2go	uv excision repair protein	-	-	4.18186e-30	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteasomal ubiquitin-dependent protein catabolic process	GO:0043161	Biological Process	4.18186e-30	82%
Blast2go	nucleotide-excision repair	GO:0006289	Biological Process	4.18186e-30	82%
Blast2go	damaged DNA binding	GO:0003684	Molecular Function	4.18186e-30	82%
Blast2go	nucleus	GO:0005634	Cellular Component	4.18186e-30	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin	IPR000626	-	4.18186e-30	82%
Blast2go	Ubiquitin supergroup	IPR019955	-	4.18186e-30	82%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
100			40	60	1.0
124		10	90		0.90298
126	90		10		0.90298
128		10	90		0.90298
129		10	90		0.90298
130	90		10		0.90298
132		10		90	0.90298
394		25	75		0.996473
396	75			25	0.996473
398	75		25		0.996473
399	75			25	0.996473
400		75	25		0.996473
402	66	33			0.997452
403	66	33			0.997452
404	66			33	0.997452
406		66	33		0.997452
407	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain