SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16411

Length: 1233 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16411

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pip2g, PIP2-7; plasma membrane intrinsic protein2	-	-	80%
FL-Next	tr=PaMip-2; Picea abies (Norway spruce) (Picea excelsa).	-	-	91%
Blast2go	plasma membrane intrinsic protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	90%
Blast2go	water channel activity	GO:0015250	Molecular Function	90%
Blast2go	vacuole	GO:0005773	Cellular Component	90%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	90%
Blast2go	integral to membrane	GO:0016021	Cellular Component	90%
Blast2go	nucleus	GO:0005634	Cellular Component	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: O49921

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 267 - 309

Fln protein: PYIMLVQRHRVTVMVEISEFLVLFGVAGGHINPAVTFGLFLARKVSLPRAVLYMIAQCLxxICGTGLVKAFQKSFYDRYGGGANFVHPGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVCVNIHIYGSFVFA*GLA*GQEFH*TCFGCVGLGSIAYWFCCFHGTFGHHSHHWDRHQPCKELRSSSDLWPQTILE*PMDFLGRSFLWSCISCCLPPIYSEGSSYQGLGIVPKQPPCVIRRQLLQVGVVVSQVCRYAIKE*

Protein Length: 268

Fln nts: TCCATATATAATGTTAGTCCAGCGGCACAGGGTCACTGTTATGGTTGAGATTTCTGAATTCCTTGTTTTGTTTGGTGTTGCAGGAGGGCATATCAATCCTGCTGTCACTTTTGGACTGTTTTTAGCTAGGAAGGTTTCCTTGCCAAGAGCTGTTCTGTATATGATAGCACAGTGTTTGxxxxxxATTTGTGGAACTGGATTGGTGAAGGCCTTCCAAAAGAGTTTCTATGATAGATATGGGGGTGGAGCTAACTTTGTGCATCCCGGATACACCAAGGGTGTGGGTTTGGCTGCTGAAATCATCGGCACCTTTGTGCTGGTTTACACTGTTTTCTCTGCAACCGACCCCAAGCGCAGTGCTCGAGACTCCCATGTTCCTGTATGTGTAAATATACATATATATGGTAGTTTTGTATTTGCATAGGGCCTTGCCTAAGGGCAGGAATTTCATTAGACTTGCTTTGGGTGTGTAGGTCTTGGCTCCATTGCCTATTGGTTTTGCTGTTTTCATGGTACATTTGGCCACCATTCCCATCACTGGGACAGGCATCAACCCTGCAAGGAGCTTCGGAGCAGCAGTGATTTATGGCCACAAACAATCTTGGAATGACCAATGGATTTTCTGGGTAGGTCCTTTTTGTGGAGCTGCATTAGCTGCTGCCTACCACCAATATATTCTGAGGGCAGCAGCTATCAAGGCCTTGGGATCGTTCCGAAGCAACCCCCATGTGTAATTAGGAGACAGTTGCTGCAGGTAGGAGTTGTCGTGTCTCAAGTCTGTAGGTATGCAATAAAAGAATAA___TAGCTATGGACAATTTATGTCTAGCACTGGATGACACCAAGTAGCAACAGTGAGGAGAATTGTTTGTGGAAGATAGCTCCTTCTCTCAGACCCTTGATTTGGGGGAAGTATTACTGAGTACAAAGGGCAGAGCGGGTGATGGTTTGTTCGTTTGGATTGAATCCAGTGTTGCTGCAGCAGCAGTAAGAATGGTTGTAATTTATGTAGACATTATGCATGGTTGTACTCAGAAGTAGTACCTCCTCTCCATGGAATTGTTCATAATTTCTTCTTCCTCTGCTCTGTTTGTTAATCAGATGGTTAGTACACTGGTTTGTAAGTATAGTGTTTGTGTGTCCTCTTCTTCTGTAAACATGATTTGTGGGCAGTTGCATATAACATCCATTTGGAATTAAAGTTTCTTCTCCAGCTTTTGCAAGTTATGACCATCTC

Fln Alignment:

sp_v1.1_unigene16411___GVAGGHINPAVTFGLFLARKVSLPRAVLYMIAQCLGxxxxxxxAICGTGLVKAFQKSFYDRYGGGANFVHPGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVCVNIHIYGSFVFA*GLA
O49921_______________GISGGHINPAVTFGLFLARKVSLPRAILYMIAQCLGxxxxxxxAICGTGLVKSFQKSFYDRYGGGANYVHHGYTKGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPI-GFAVFMVHLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain