SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16391

Length: 1253 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16391

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin reductase n=1 Tax=Ginkgo biloba RepID=Q5XLY0_GINBI	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	anthocyanidin reductase	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	73%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	73%
Blast2go	catalytic activity	GO:0003824	Molecular Function	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	73%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9M9

Fln msg:

Fln protein: MGMLLCKYSRNLNSHQFSLTTPGRMEGVNHQILKMAAAMINVQATTVCVTGATGYVGSWLVKCLLNQGYTVHATVRDPENETKVRHLLDIPGAAERLKLFRAELLEEGSFDAAVTGCGGVFHVATPTESAPKDPEEDMIKPAVDGTLNVLRASTKAQTVKRVVVTSSSATVAMNESEEQNQDIDESCWTDAGFLRIKKPSRGWAYSASKTLAERAALQYGKEHDLDVLTIIPVLVVGSSITPTVPISVQLTLSLLTGIPDDLQVLKEQQLSAGSISLVHVDDLCKAHIFLMENLATEGRYICSAINMSVPQLALYLSKRYPQYNVPTQFEDVPPISKVNLSSKKLVESGFSFKLGLDEIFDDAVEYLKIKGMLNQ*

Protein Length: 377

Fln nts: _-_ATGGGGATGCTCCTGTGTAAATATTCACGGAACCTCAACTCTCATCAATTCTCCTTGACAACACCAGGAAGGATGGAAGGAGTGAACCACCAAATCCTGAAAATGGCCGCTGCAATGATCAATGTCCAGGCAACCACTGTGTGCGTGACGGGAGCGACTGGTTACGTGGGCTCCTGGCTAGTGAAGTGCTTACTCAACCAGGGTTACACCGTTCACGCTACAGTGCGCGATCCAGAGAATGAGACGAAGGTGCGCCATCTCCTGGACATCCCGGGCGCTGCAGAAAGGCTCAAGCTCTTCCGAGCGGAGCTGTTGGAAGAAGGCAGTTTTGACGCCGCCGTCACTGGCTGCGGCGGTGTTTTTCATGTGGCGACTCCTACCGAGTCGGCCCCCAAAGATCCAGAGGAGGATATGATCAAGCCGGCAGTCGACGGAACGCTGAATGTTCTGAGGGCGTCCACGAAGGCCCAAACCGTCAAGCGCGTGGTGGTCACATCGTCTTCGGCGACGGTTGCCATGAACGAGTCAGAGGAGCAGAATCAAGACATTGACGAATCTTGCTGGACAGACGCCGGTTTCCTCCGGATTAAAAAGCCAAGCCGTGGATGGGCATACTCGGCTTCCAAAACTCTTGCAGAGAGAGCAGCGCTGCAATACGGAAAGGAACACGATCTGGATGTGTTGACCATCATTCCTGTGCTTGTCGTCGGCTCTTCCATCACGCCAACCGTTCCCATCAGCGTCCAATTGACGCTTTCCTTGCTCACGGGCATCCCAGACGACTTACAGGTTTTGAAGGAGCAACAGTTATCAGCGGGCTCCATCTCATTGGTACACGTGGACGATCTGTGCAAGGCCCACATCTTCTTGATGGAGAACCTCGCTACAGAGGGCCGCTACATTTGTAGTGCCATCAATATGTCCGTCCCACAGCTGGCACTTTATTTATCCAAACGCTATCCGCAGTACAATGTACCTACCCAATTTGAAGATGTACCGCCGATCTCAAAAGTAAACCTGTCATCTAAGAAATTGGTGGAGAGCGGTTTCTCCTTTAAATTGGGGCTGGATGAAATCTTCGATGACGCTGTTGAATACCTAAAGATCAAGGGCATGCTTAATCAATAA___GATTTTAGTGTTTTCTTGTTTGGAAAGTTGTGCCTTTTCTTTCAATGATCCGAATCTAAAATCTTGTTAAAGATAAACATTTCTACCCATGTTCAAGTTTTCTCAAATGACCATTTACACCTGGG

Fln Alignment:

sp_v1.1_unigene16391___MEGVNHQILKMAAAMINVQ----ATTVCVTGATGYVGSWLVKCLLNQGYTVHATVRDPENETKVRHLLDIPGAAERLKLFRAELLEEGSFDAAVTGCGGVFHVATPTESAPKDPEEDMIKPAVDGTLNVLRASTKAQTVKRXXXXXXXXXXXMNESEEQNQDIDESCWTDAGFLRIKKPSRGWAYSASKTLAERAALQYGKEHDLDVLTIIPVLVVGSSITPTVPISVQLTLSLLTGIPDDLQVLKEQQLSAGSISLVHVDDLCKAHIFLMENLATEGRYICSAINMSVPQLALYLSKRYPQYNVPTQFEDVPPISKVNLSSKKLVESGFSFKLGLDEIFDDAVEYLKIKGMLN
D5A9M9_______________MEGANPQILKMAAEIIHDQDRRATTTVCVTGASGYVASWLVKCLLNQGYIVHATVRDPENEAKVRHLLDIPRDEETLKLFRAELSEDGSFDAAVAGCAGVFHVASPTEFAPKDPENDVIKPAVEGTLNVLQSCTKAKTVKRVVVTSSAAAIAMKESEDQNQYMDESCWTDVDFVRTKMSNSSWAYTVSKTLAEQAALQYGKEHDLDVVTIIPVIVVGSSITPTIPISVQLALSLLTGIPSDLQVLKELQLPSGALSLVHVDDLCKAHIFLMENPSTEGRYICNATDIPVAQLAHYLSKRYPEYNVPTQFEDVPVISKLNPSSKKLVESGFSFKLGLDEIFDDAVKYLKMKGMLN

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
451		80		20	0.995493
480	10	90			0.90298
485	10		90		0.90298
589	87	12			0.992554
590		12		87	0.992554
648	90		10		0.90298
660		90		10	0.90298
693		72		27	1.0
699		18		81	0.999994
717		22		77	0.999999
750	83		16		0.994512
759		20		80	0.995493
771			75	25	0.996473
785	75		25		0.996473
789	66	33			0.997452
881	85		14		0.993533
885		14		85	0.993533
887		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain