SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16390

Length: 1066 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16390

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cytidine deaminase 1, 2, 7, putative (EC:3.5.4.5); K01489 cytidine deaminase [EC:3.5.4.5]	-	-	43%
FL-Next	sp=Cytidine deaminase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	protein	-	-	59%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cytidine deaminase.	EC:3.5.4.5	-	0.0	59%

Source	KEGGs	Term	Identity
Blast2go	Pyrimidine metabolism	00240	59%
Blast2go	Drug metabolism - other enzymes	00983	59%
Blast2go	Metabolic pathways	01100	59%

Source	ECs	Term	Type	e value	Identity
AutoFact	Cytidine deaminase.	EC:3.5.4.5	-	0.0	43%

Source	KEGGs	Term	Identity
AutoFact	Pyrimidine metabolism	00240	43%
AutoFact	Drug metabolism - other enzymes	00983	43%
AutoFact	Metabolic pathways	01100	43%

Source	GOs	Term	Type	Identity
Blast2go	cytidine metabolic process	GO:0046087	Biological Process	59%
Blast2go	cytidine deaminase activity	GO:0004126	Molecular Function	59%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWW0

Fln msg: your sequence is shorter than subject: 305 - 338

Fln protein: RFCVGAVGLGASGRIFKGVNLEFEGLPLNHSVHAEQFLVANAAQHGEVQLRFIAVSAAPCGHCRQFLQEVWGVPEINILIADEHAETQSLLYFLPHRFGPDDLEESTALVFEPHFNGLTFWPMKSPELNPKLNLCNGDQGEKEDVLNLCIGDGHAKEDALNLCNGDADVKEDQLNFCNGDGNVKEENIDSFEGLYQLGVAALKAANSAHAPYSKCPSGIALMTAKGNICTGFYIESAAFNPSLSPLQAALVAFLCQDGGNYEDIIHAVLVEKKGAVVQQGDTIKLALQKISPKCSFHLLNCKIK*

Protein Length: 306

Fln nts: AGATTTTGTGTCGGAGCTGTCGGCCTTGGAGCGAGTGGACGCATCTTCAAGGGAGTAAATTTGGAATTTGAAGGTCTTCCTCTGAATCATTCTGTTCATGCCGAGCAGTTTCTGGTAGCCAATGCAGCACAACACGGAGAGGTCCAGCTTAGATTCATTGCGGTCTCAGCAGCCCCATGTGGGCATTGCAGGCAATTTCTGCAAGAAGTGTGGGGTGTACCTGAGATTAACATATTGATAGCTGATGAACATGCCGAAACCCAGTCTCTATTGTATTTCCTTCCCCACAGATTTGGTCCAGATGATTTGGAGGAAAGCACCGCTCTGGTTTTTGAACCTCACTTCAATGGCCTGACTTTTTGGCCTATGAAATCTCCTGAATTGAATCCTAAATTGAACTTGTGTAATGGTGATCAAGGTGAAAAGGAAGATGTATTGAACCTGTGTATTGGTGATGGACATGCAAAGGAAGATGCATTGAACTTGTGTAATGGTGATGCAGATGTAAAGGAGGATCAATTGAACTTTTGTAACGGTGATGGAAATGTAAAGGAGGAAAATATCGACAGCTTTGAAGGTTTGTATCAACTCGGGGTAGCAGCTCTCAAAGCTGCAAACTCAGCACATGCTCCATATAGTAAGTGTCCTTCTGGAATCGCTCTGATGACAGCAAAAGGGAACATTTGTACGGGATTTTATATTGAGTCTGCAGCATTCAACCCCAGCCTTTCTCCTTTGCAAGCGGCTCTCGTTGCATTTCTTTGTCAGGATGGAGGAAACTATGAAGACATTATCCATGCTGTCCTTGTGGAAAAGAAAGGAGCTGTTGTTCAGCAAGGTGATACTATTAAACTTGCTCTGCAGAAAATCTCTCCCAAATGCTCATTTCATCTTTTAAATTGTAAAATAAAATGA___TCTGATCACTCTCAGTCATTTGCATTAAAGATCAATCAAATGATTCTAAAATGGTTTGCCATGCCTTTTGTGAGACATCATAAAATTATGCATGAAAATTCATTTGCATATTCCATAAATCCAAGCCTCCTCAGAGATCTGTCCCAATATG

Fln Alignment:

sp_v1.1_unigene16390___RFCVGAVGLGASGRIFKGVNLEFEGLPLNHSVHAEQFLVANAAQHGEVQLRFIAVSAAPCGHCRQFLQEVWGVPEINILIADEHAETQSLLYFLPHRFGPDDLEESTALVFEPHFNGLTFWPMKSPELNPKLNLCNGDQGEKEDVLNLCIGDGHAKEDALNLCNGDADVKEDQLNFCNGDGNVKEENIDSFEGLYQLGVAALKAANSAHAPYSKCPSGIALMTAKGNICTGFYIESAAFNPSLSPLQAALVAFLCQDGGNYEDIIHAVLVEKKGAVVQQGDTIKLALQKISPKCSFHLLNCKIK
A9NWW0_______________KFYVGAVGLGASGRIFKGVNLEFEGLPLNHSVYAEQFLVANAAQHGELQLRFIAVSAAPCGHCRQFLQELWGVPEINILIADEHAETRSLLYFLPHRFGPDDLEESTPLVFEPHFNGLAFWSMNSPELNSKLNLCNGDQDVKEDALNLCNRDGDVKEDTFDLCNGDGDLKEESIH-----------NFSDSEDLYQLRVAALKAANSSHAPYSKCPSGIALMTTKGKICTGFYIESAAFNPSLSPLQAAIVAFICQDGGNYEDIVHAVLVEKKGAVVQQGDTIKLALQKISPKCSFHPFNCYIK

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
335		33	66		0.997452
336	66		33		0.997452
337	66			33	0.997452
339		66	33		0.997452
341		66	33		0.997452
346		66	33		0.997452
347	66		33		0.997452
348	66	33			0.997452
351			66	33	0.997452
355		33	66		0.997452
379		75	25		1.0
384	75	25			1.0
389	75			8	0.99999
390	75	16	8		0.99999
392		75		8	0.99999
393		83	16		0.999991
395	75	25			1.0
397	75	16	8		0.99999
399	16			83	0.999991
478	16			83	0.999991
479			81	18	0.999994
678	90		10		0.90298
679	88			11	0.923564
680	88	11			0.923564
682		11	88		0.923564
683			88	11	0.923564
684		11	88		0.923564
715	14		85		0.993533
744	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain