SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16384

Length: 806 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16384

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S11-1 n=12 Tax=core eudicotyledons RepID=RS111_ARATH	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	40s ribosomal protein s11	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	89%
Blast2go	translation	GO:0006412	Biological Process	89%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	89%
Blast2go	rRNA binding	GO:0019843	Molecular Function	89%
Blast2go	cell wall	GO:0005618	Cellular Component	89%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	89%
Blast2go	membrane	GO:0016020	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S17	IPR000266	-	89%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	89%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	89%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
291	80		20		1.0
328	60		40		1.0
334	30		70		1.0
359	80		20		0.995493
385		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain