SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16372

Length: 1307 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16372

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DTW domain-containing protein	-	-	3.0e-27	44%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	39%
Blast2go	dtw domain-containing protein	-	-	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DTW	IPR005636	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9I7U2

Fln msg: your sequence is shorter than subject: 293 - 328

Fln protein: MGVAEDINRPKPKRAFCHRCYKAAILCICNRIEKRVENAIGVTILQHTEENKHPFGSARVASLGLNNVQLISVPELEHEICYRIRPKVPGSKRSIVGRVGKKGRIPLINEENNTQNNESTETFEGSAETRTVKEALDHGFGIEKFYIGHPASNLEGTNNIHFPSWFNLPSGSALLYPSEKAVDLSPGFQGFEIKHLVVLDGTWAKAKRVYLENPWLRLLPHLRLPWKDPSIYSEVRRQPKPGCLSTIESIVYALKMLEPGTEGLDSLLQVFDSMVGDQRRCKEERLGKLTEA*

Protein Length: 294

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGTCGTGACCTTGGCTGTCACTCAATCCGTCGGTGTAGTTCCGAGTTTCTGCAAAATAATAAAATCATCTCC_-_ATGGGAGTTGCTGAAGACATTAATCGTCCGAAGCCCAAAAGAGCATTCTGCCATAGATGCTACAAAGCCGCAATCCTCTGTATCTGCAATCGCATAGAAAAACGCGTGGAAAACGCCATAGGAGTAACCATTCTACAGCATACAGAGGAGAACAAGCACCCATTTGGATCGGCCCGTGTGGCGTCCCTGGGATTAAATAATGTTCAATTGATCTCCGTTCCTGAACTCGAACACGAGATCTGCTACAGAATCCGCCCCAAAGTACCGGGTTCGAAGAGAAGCATCGTCGGTAGAGTGGGTAAAAAGGGCCGAATCCCTCTAATAAACGAAGAAAATAATACCCAAAACAATGAATCTACAGAAACCTTCGAGGGTTCTGCAGAAACCCGAACGGTGAAAGAAGCCTTAGACCATGGTTTTGGGATCGAAAAATTTTATATAGGTCACCCGGCTTCGAATCTAGAAGGCACTAATAATATCCATTTTCCTTCGTGGTTTAATTTGCCGTCTGGTTCTGCCCTGCTTTACCCCAGCGAAAAGGCCGTGGACCTCTCGCCTGGCTTTCAAGGGTTTGAGATTAAACATTTGGTGGTTTTGGACGGGACGTGGGCTAAAGCGAAGAGGGTTTATCTCGAGAATCCTTGGTTAAGGTTGTTGCCTCATCTTCGCTTGCCATGGAAGGATCCAAGTATTTATTCTGAGGTGAGACGCCAGCCTAAGCCCGGTTGTCTGTCCACGATAGAGAGTATTGTTTATGCATTGAAGATGCTTGAACCCGGAACCGAAGGGTTGGATTCTCTTCTGCAAGTTTTTGATTCCATGGTTGGAGACCAGAGGCGTTGCAAGGAGGAGAGGCTGGGAAAGCTGACGGAAGCGTGA___GTTTTTTTGTTCATTTCCACACATTCTGGACTCTTGATTCATTGAATTGAATTTTTTATTGCCATCTATGGAATGACTTTTACTTGGGGGCTAGGGTTTCAGATCTTACGGGTTGATGTTAATTCTATTTCTGAGATGGGGGGTTTTAAGTATTAGTGAGGATGCTCTGGTGATTCATGTTTTCTCATACTTGCAAAGGCATGATTACCTGTGTGGCTTAATTCTTGGGGATAGTACTAGTGATTATAAACTCTAATATGTGTAGAGCTGGCATGAAGACTCTGGCTTTACATCACTTGTAGCAAATTTTGATTTGAAGAGCAAAGCAAT

Fln Alignment:

sp_v1.1_unigene16372___KPKRAFCHRCYKAAILCICNRIEKR-VENAIGVTILQHTEENKHPFGSARVASLGLNNVQLISVPELEHEICYRIRPKVPG----------------------------------SKRSIVG-RVGKKGRIPLIXXXXXXXXXXXXXXXXGSAETRTVKEALDH---GFGIEKFYIGHPASNLEGTNNIHFPSWFNL--PSGSALLYPSEKAVDLSPGFQG--FEIKHLVVLDGTWAKAKRVYLENXXXXXXXXXXXXXKDPSIYSEVRRQPKPGCLSTIESIVYALKMLEPGTEGLDSLLQVFDSMVGDQRRCKEERLGKLTEA
B9I7U2_______________KSKRPTCPSCSKPASLCICIRIQNPGLQNKVNITILQHSLERKHALNSARIARVGLQNVTLSTVSDVKFDAKFMIHLFDPGHDSGSGQDGEKSSDFYQVMDDKADEFDASHVTKGSKEPVITCSVGKYGIVTNISIGNVWMPHVQWKRRLSFDKILASKVAVDDLAKGFVVKKLQ----RRRVDGSEELEEVEEFEVAVPPGSVLLFPSKNALDVD-GLKAMDFEAKNLIVLDGTWSKARRMYCENPWLRFLPHLKLDLDRLSLYSEVRQQPKAGYLSTIESIVYALEEIGDYPEGLDNLLGVFESMVGDQRRFRNERLSKLSSA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
828		13		86	1.0
834	13			83	1.0
837	86			13	1.0
838		86		13	1.0
840	86		13		1.0
841		13		86	1.0
842	86			13	1.0
844	86			13	1.0
845		13	86		1.0
847		13	86		1.0
988			10	90	0.90298
989			90	10	0.90298
1147		33		66	0.997452
1217	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain