SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16368

Length: 1193 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16368

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Vacuolar protein sorting-associated protein VPS28, putative; K12184 ESCRT-I complex subunit VPS28	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	85%
Blast2go	transporter activity	GO:0005215	Molecular Function	85%
Blast2go	ESCRT I complex	GO:0000813	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Blast2go	Vacuolar protein sorting-associated, VPS28	IPR007143	-	85%
Blast2go	Vacuolar protein sorting-associated, VPS28, N-terminal	IPR017898	-	85%
Blast2go	Vacuolar protein sorting-associated, VPS28, C-terminal	IPR017899	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9P7

Fln msg:

Fln protein: MAADMAREVKLWNDKREREMYDNFADLFAIIRTMEKLEKAYVRDVISSKDYEPECTKLIAQFKTLTTSLKDTVPSVERFMETYKMDCPAAMNRLLVSGIPATVEHRASSSDLGTAAAVAECVQHFITSMDSLKLNMVAVDQLYPALSDLLSALSRVPQLPPDFEGKVKAREWISRLKNMGASEELTEQQARQLLFDLDSSYNAFINSLPKAA*

Protein Length: 214

Fln nts: ATGGGGGCGCTGCTGTAAGCCACGTCGTGACCTTGGCTGTCACaCAATCCTCTATCTAGGCGAATCCTTAAAACcCTCCTCAAGCATGACAACGCTCGAAAAACTAGCACTTCAACCGTCGACCATCAGCAGGCTTGTACCACATCCTCGCACCCCGCGATTCCCAAACCCTACCTAGCTGTTACAACCTGACTGACGGATCAACGCTAGATTCTACTCTGCAACCTCGCTGTATGGCACATTTTGACACTTTATAAACCCAAATGAAACCCTATTAGACGCACAGAGCATCAAAATTCGCGGGGATTTCACTGTTATTTAAAGACTCTCAGTTAAAATT_-_ATGGCGGCTGATATGGCGAGGGAGGTAAAATTATGGAACGATAAACGCGAGCGTGAAATGTATGATAATTTCGCAGACCTCTTTGCAATCATAAGAACTATGGAGAAACTGGAGAAGGCGTATGTCCGTGACGTAATTTCCTCAAAAGATTACGAACCGGAATGCACAAAGCTGATTGCCCAATTTAAAACCCTAACAACTTCTCTGAAAGACACAGTCCCAAGCGTTGAGAGATTCATGGAAACCTACAAGATGGATTGCCCTGCTGCTATGAATCGCTTACTTGTTTCCGGGATTCCGGCCACCGTTGAACACAGGGCCTCATCATCAGACTTGGGCACAGCCGCTGCTGTCGCCGAATGCGTACAGCATTTTATTACCTCAATGGATTCTCTGAAGCTTAATATGGTGGCGGTGGATCAGTTATACCCCGCGCTTTCGGATCTTTTGTCGGCCCTGAGTAGGGTTCCTCAGCTTCCACCGGACTTTGAGGGTAAAGTGAAAGCCAGAGAATGGATTTCGAGGTTGAAGAACATGGGGGCATCGGAGGAGCTAACCGAACAGCAGGCCCGTCAGTTGTTATTTGATCTGGATTCTTCTTATAACGCTTTCATCAATTCATTGCCTAAAGCGGCTTAA___CATTGCAGGGGGCAGCGCAACTTCTGGATGCCATTGGCATCGGATTTGTACGTGGTTTGATCTCTAGAGGTTTTGTAGGTCTAGCCGTGACTTTATATTTGTGAAAATATGTAAAATTCAAAGATTCAGAGCAAAATCTCTTGTTCATAATTTTATATTAAAGTGATATTTTCATTCGCTTTCCAGAAAAGCAGAATTGGTTTATTGACAAAAT

Fln Alignment:

sp_v1.1_unigene16368___MAADMAREVKLWNDKREREMYDNFADLFAIIRTMEKLEKAYVRDVISSKDYEPECTKLIAQFKTLTTSLKDTVPSVERFMETYKMDCPAAMNRLLVSGIPATVEHRASSSDLGTAAAVAECVQHFITSMDSLKLNMVAVDQLYPALSDLLSALSRVPQLPPDFEGKVKAREWISRLKNMGASEELTEQQARQLLFDLDSSYNAFINSLPKAA
D5A9P7_______________MAADMAREVKLWNDKREREMYDNFADLFAIIRTMEKLEKAYVRDVISSKDYEPECTKLIAQFKTLTTSLKDTVPSVERFMETYKMDCPAAVNRLLVSGIPATVEHRASSSDVGTAAAVAECVQHFITSMDSLKLNMLAVDQLYPALSDLLSALNRVPQLPPDFEGKVKGREWISRLRNMGASEELTEQQARQLLFDLDSSYNAFINSLPKSA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
245			66	33	0.997452
329		33		66	0.997452
1116	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain