SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16363

Length: 1784 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16363

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	FCLY; FCLY (FARNESYLCYSTEINE LYASE); prenylcysteine oxidase; K05906 prenylcysteine oxidase [EC:1.8.3.5]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Prenylcysteine oxidase.	EC:1.8.3.5	-	0.0	72%

Source	ECs	Term	Type	e value	Identity
AutoFact	Prenylcysteine oxidase.	EC:1.8.3.5	-	0.0	56%

Source	GOs	Term	Type	Identity
Blast2go	farnesyl diphosphate metabolic process	GO:0045338	Biological Process	72%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	72%
Blast2go	prenylcysteine catabolic process	GO:0030328	Biological Process	72%
Blast2go	prenylcysteine oxidase activity	GO:0001735	Molecular Function	72%
Blast2go	endomembrane system	GO:0012505	Cellular Component	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Prenylcysteine lyase	IPR010795	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV45

Fln msg: Overlapping hits, possible frame ERROR between 271 and 256,

Fln protein: MEIARGFALWAVELVDPPLPISSxxxxxxxNETQMEISVFEKNPTVGGRMAMVELAGDKFEAGGSILHPKNLHTLQYTELLGLKRKTSSDDDSEFGIWDGKKFIFKTFPAGKSGFPAIITPFINNILIFWRYGISLLKMQDYVSNLLNRFLHYYEDSRPIFYTVDEMLKWADLHEYPRHTLQKELVAAGLSPRLISELVTVIMRINYGQNVDISGLAGAVSLCGSGGGLWSVEGGNWQMAAGLIDRADVSLHLNKQVASISLKGKNYEVNSTDGQVYYCEVVVVATPLDEVKIDFIPPISIPERHLHHTYTTFVRGLLNPVYFGLSSTSSLPDLIGTVEVPDLPFSSISILKDYSKDDKAYKIFSRKPMADDLLNKIFSDRKETIRIDWAAYPHYQAPEEFAPFLLDGHHLYYINAFENAASTMETSSVSAENIARLILSRLPGGRLQISKSETSDSNNAKMHPEL*

Protein Length: 468

Fln nts: ATGGGGATATACTGGGGCTAAATGCCTCCGCTGATAGACAAAGGGCATTGCAACCAAGAAGAGAAGCTGAATGAACGATCGCATGTAAAGGACGAAGCAATGGGGAAGGAAGACCGGGCAATGGAATGGAAAACAGTGGCGTGGATGATAAGCGTGTTGGTGGTTCAATTCATTGGTCATACGA_-_ATGGAGATAGCCAGAGGGTTTGCATTGTGGGCAGTGGAATTGGTGGATCCTCCGCTGCCCATTTCCTCAxxxxxxxxxxxxxxxxxxxxxAACGAGACTCAGATGGAGATCAGTGTGTTCGAAAAGAACCCAACTGTGGGAGGACGGATGGCGATGGTTGAGTTAGCAGGGGACAAGTTCGAAGCCGGAGGATCGATTTTACATCCCAAAAATCTCCACACTCTTCAATATACTGAATTGCTTGGCCTCAAACGTAAGACGAGCAGCGACGATGACAGTGAATTTGGGATATGGGATGGGAAGAAATTTATATTCAAAACTTTCCCTGCAGGAAAATCTGGGTTTCCTGCAATCATAACTCCATTCATCAATAACATTTTAATATTTTGGCGATATGGAATCAGTCTGCTAAAGATGCAAGATTATGTCTCTAACCTCCTGAATAGGTTCTTGCATTATTACGAGGATTCACGTCCCATTTTTTACACAGTGGATGAAATGTTGAAATGGGCAGATCTCCATGAATACCCAAGGCACACTCTTCAGAAAGAATTGGTTGCTGCAGGATTATCTCCACGTCTAATATCCGAGCTTGTGACGGTTATTATGAGAATTAATTATGGACAGAATGTGGATATCAGTGGATTAGCTGGAGCAGTTTCCTTGTGTGGGTCTGGTGGCGGGCTTTGGTCAGTGGAAGGAGGCAATTGGCAGATGGCTGCAGGTTTAATTGATCGGGCAGATGTTTCTTTACACCTCAACAAACAAGTTGCCTCAATTTCATTGAAGGGGAAGAATTATGAAGTAAACTCTACTGATGGGCAAGTTTATTATTGTGAAGTTGTTGTTGTGGCTACCCCTCTGGATGAGGTCAAAATCGACTTTATCCCACCAATCTCAATTCCAGAGCGACATCTTCACCACACTTATACAACATTTGTCAGGGGCCTCTTAAATCCGGTATACTTTGGGTTGTCATCTACTTCCAGCCTTCCTGATCTAATAGGCACTGTAGAAGTACCGGATTTGCCATTTTCAAGTATATCTATATTGAAGGACTATAGCAAAGATGACAAAGCTTATAAGATATTTTCACGCAAACCTATGGCAGATGATTTGCTGAATAAAATTTTCAGCGATAGAAAAGAGACCATACGAATAGACTGGGCTGCATATCCTCACTATCAAGCACCTGAGGAATTTGCTCCTTTTTTGTTGGATGGTCATCACCTGTATTACATTAATGCATTTGAAAATGCTGCTAGTACTATGGAGACAAGTTCTGTATCTGCTGAAAATATTGCACGACTTATCTTATCTAGATTACCTGGTGGTCGATTACAGATATCAAAATCAGAAACTTCTGATTCAAACAATGCAAAAATGCATCCAGAGCTATAA___GCAGTTGGATGCTTGGGCCTTAAAAACAGTTAGATGTGTATATCAAGATTTTCTTTTAAGCAGAGTTGTATCTGATGTTGGATGATTATCAAATCTCAGTTTTTTATTGTGTAAAAGATTGACCTTTAAACTCAGAGAACACTGGCAATATGCATTATAAATGATACATTCATCTTGCTATATGCAATTGACTCAAACTT

Fln Alignment:

sp_v1.1_unigene16363___MEIARGFALWAVELVDPPLPISSESIPxxSQETNETQMEISVFEKNPTVGGRMAMVELAGDKFEAGGSILHPKNLHTLQYTELLGLKRKTSSDDDSEFGIWDGKKFIFKTFPAGKSGFPAIITPFINNILIFWRYGISLLKMQDYVSNLLNRFLHYYEDSRPIFYTVDEMLKWADLHEYPRHTLQKELVAAGLSPRLISELVTVIMRINYGQNVDISGLAGAVSLCXXXXXXXXXXXXNWQMAAGLIDRADVSLHLNKQVASISLKGKNYEVNSTDGQVYYCEVVVVATPLDEVKIDFIPPISIPERHLHHTYTTFVRGLLNPVYFGLSSTSSLPDLIGTVEVPDLPFSSISILKDYSKDDKAYKIFSRKPMADDLLNKIFSDRKETIRIDWAAYPHYQAPEEFAPFLLDGHHLYYINAFENAASTMETSSVSAENIARLILSRLPGGRLQISKSETSDSNNAKMHPEL
A9NV45_______________MGIASGFALWAAELVDPPLPISSESIPxxNKET-ETEMEIHVFEKNPTVGGRMAMVELAGDKFEAGGSILHPKNLHTLQYTELLGLKRKTSSDDDSDFGIWDGQKFIFKTFPGGKSGFPATISTFINNLLIFWRYGTSLLKMQEYVSNLLDRFLRYYEDSRPIFYTVDEMLKWADLHEYTRHTLQKELVAAGLSPRLISELVTVIMRINYGQNVDISGLAGAVSLCGSGGDLWSVEGGNWQMAAGLIDQANVSLHLNKEVASISLKGEQYEVNSTDGQVYDCEVVVVATPLDEVKISFIPLISIPERHLHHTYTTFVRGLLNPVYFGLSSTSSLPDLIGTLEVPDLPFSSISILKDYSRDDKAYKIFSRKPMADDLLNEIFSDRKETIRIDWAAYPHYQAPEKFAPFLLDGHHLYYINAFENAASTMETSSVSAENIARLILSRLPGGRLQISRSEISDLGNAKMHPEL

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
378	10		90		0.90298
772		85		14	0.993533
950		71	28		1.0
952	71		28		1.0
959		14		85	0.993533
976			83	16	0.994512
1001	33		66		1.0
1090	88			11	0.923564
1092	88			11	0.923564
1093		11	88		0.923564
1094	11	88			0.923564
1095		11	88		0.923564
1096	88			11	0.923564
1123		18		81	0.999994
1129			80	20	0.999996
1131	20		80		0.999996
1135		70		30	1.0
1136		10	20	70	0.999998
1137			30	70	1.0
1138	70	30			1.0
1139	80			20	0.999996
1140	70		30		1.0
1142		90	10		0.90298
1144	10	90			0.90298
1146		20	80		0.999996
1147	20		70	10	0.999998
1148			10	90	0.90298
1150		10		90	0.90298
1152		90	10		0.90298
1153			10	90	0.90298
1154		10		90	0.90298
1155		10		90	0.90298
1164	88		11		0.923564
1323		12		87	0.992554
1432			87	12	0.992554
1479			9	90	0.999842
1506			4	95	0.997218
1667	53		46		1.0
1668	53		46		1.0
1687	11			66	0.999999
1688	55			11	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain