SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16336

Length: 1173 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16336 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Surfeit locus protein, putative	-	-	2.0e-39	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	surfeit locus protein 5 family protein	-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription from RNA polymerase II promoter	GO:0006357	Biological Process	84%
Blast2go	RNA polymerase II transcription mediator activity	GO:0016455	Molecular Function	84%
Blast2go	mediator complex	GO:0016592	Cellular Component	84%

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
505	4			95	0.996252
516	95		4		0.99692
548	95	4			0.997494
569	95		4		0.997494
570	95			4	0.997494
572	4			95	0.997494
576	95	5			0.997749
577		5	95		0.997749
580	94		5		0.997984
581	87			12	1.0
582		92	7		1.0
585		89	2		0.999999
586			89	10	1.0
588	11			88	1.0
590	11			88	1.0
593			2	86	1.0
594		11		88	1.0
595	11		2	86	1.0
598			13	86	1.0
603	86	11		2	1.0
607	86		13		1.0
624		93	6		0.999264
626		3	90		0.997952
633		7	92		0.999664
636		88	7		0.999079
637		92	8		0.999718
638	92			8	0.999718
881		6		80	0.999961
1143		11	88		0.923564
1144	14	14			0.984337
1145	28	14			1.0
1146	87	12			0.992554
1148	87			12	0.992554
1150	42	14			1.0
1151	71	14			0.984337
1152	14			85	0.993533
1153		14	85		0.993533
1155		14	85		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
790	801	TGC TGC TGC TGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain