SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16330

Length: 1224 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16330

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamine amidotransferase subunit pdxT, putative; K08681 glutamine amidotransferase [EC:2.6.-.-]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	pyridoxine biosynthesis protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutaminase.	EC:3.5.1.2	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	77%
Blast2go	Arginine and proline metabolism	00330	77%
Blast2go	D-Glutamine and D-glutamate metabolism	00471	77%
Blast2go	Nitrogen metabolism	00910	77%
Blast2go	Metabolic pathways	01100	77%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:2.6.-.-	-	0.0	60%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	77%
Blast2go	pyridoxine biosynthetic process	GO:0008615	Biological Process	77%
Blast2go	glutaminase activity	GO:0004359	Molecular Function	77%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	77%
Blast2go	cytosol	GO:0005829	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glutamine amidotransferase subunit PdxT	IPR002161	-	0.0	77%
Blast2go	PdxT/SNO family, conserved site	IPR021196	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNA7

Fln msg:

Fln protein: MSVGVLALQGSFHEHITALGKLGVKGVLVKKPEQLEGLVGLIIPGGESTTMARLAEYHNLIQALQDFYKKGKPIWGTCAGLIFLANKAIGQKSGGQELIGGLDCTVHRNFFGSQLNSFETELPVPKIAAEEGGPETFRAVFIRAPAILEAGPSVEVLAEYTILSKESTSTIENMENEGQYQAGEKVIVAVKQGNLLATAFHPELTSDTRWHSYFLKMLSENGDQSLVPVKVKQSPENSVSSPQLRDLPIFRQTELLSFEL*

Protein Length: 262

Fln nts: ATGGGGACATTGGATTTGACAAGGCTGAGGTTTTACACCCTTTTTGTTAACGTCGTGACCTTGGCTGTCACTGAACTGAAAAGTGAGAAACTACATGCATTTCTAGCATTAGAATCAGGTAAATTACTCAACGGAGGAGGAGAAG_-_ATGTCGGTGGGCGTGCTTGCCCTCCAGGGCTCTTTCCACGAACACATCACTGCTCTGGGGAAGCTGGGAGTGAAGGGTGTTTTAGTGAAAAAGCCTGAGCAGCTTGAAGGGCTCGTGGGGTTAATAATTCCTGGTGGGGAAAGCACTACCATGGCCAGGCTTGCAGAATATCACAACCTTATTCAAGCATTGCAAGACTTTTATAAAAAAGGAAAGCCAATATGGGGTACATGTGCAGGACTTATCTTTTTGGCAAACAAAGCAATTGGACAGAAATCAGGAGGGCAGGAACTTATTGGAGGGCTGGATTGTACAGTCCATCGTAACTTCTTTGGCAGCCAGCTGAATAGTTTTGAAACAGAACTCCCAGTTCCTAAGATTGCAGCAGAGGAAGGTGGACCAGAAACTTTTCGTGCTGTTTTTATTCGCGCTCCTGCTATTCTAGAGGCAGGTCCATCTGTTGAAGTTCTAGCTGAATATACCATTCTCTCAAAGGAATCAACGTCTACCATTGAAAACATGGAGAATGAGGGACAATATCAAGCAGGAGAAAAAGTTATTGTAGCTGTAAAGCAGGGGAATTTACTGGCAACAGCTTTTCATCCAGAGTTGACATCAGATACTCGTTGGCACAGCTATTTTTTGAAGATGCTAAGTGAGAATGGAGATCAAAGCTTGGTACCTGTCAAAGTAAAGCAAAGTCCAGAAAATTCTGTGTCATCTCCCCAACTTAGAGATCTCCCAATTTTTCGACAAACAGAATTACTAAGTTTTGAGCTATGA___AATTTGTGTAGCTTCCTTGATGACTGAATTCTTTCGTCCTAATTGGATATTCTTGTTAATTTCAAATGCTATTTGTTGCAAATTGATAATAATTCGTTCTCTTTAGTGTTGGTAATAGAGATTCATTTACTGTTGAATCTTCACTTCATATTGTCTCCCTTTTTTTGGTTATTTGCATGCCACATGGCTCTTTCTTATTTGCCATAGGAAATTTTGCAGGTGATCCTGTAACATTGTATATAATATTTCTCATATTTATGTCAGTTAATTGTGTACGTTGTGGGTGTTTTTCACTT

Fln Alignment:

sp_v1.1_unigene16330___MSVGVLALQGSFHEHITAXXXXXXXXXXXXXPEQLEGLVGLIIPGGESTTMARLAEYHNLIQALQDFYKKGKPIWGTCAGLIFLANKAIGQKSGGQELIGGLDCTVHRNFFGSQLNSFETELPVPKIAAEEGGPETFRAVFIRAPAILEAGPSVEVLAEYTILSKEST---STIENMENEGQYQAGEKVIVAVKQGNLLATAFHPELTSDTRWHSYFLKMLSENGDQSLVPVKVKQSPENSVSSPQLRDLPIFRQTELLSFEL
A9NNA7_______________MSVGVLALQGSFHEHLAALGKLGVKGVLVKKPEQLEGLVGLIIPGGESTTMARLAEYHNLIQALQNFYKKGKPIWGTCAGLIFLANKAIGQKSGGQELIGGLDCTVHRNFFGCQLNSFETELPIPKIAAEEGGPETFRAVFIRAPAILEAGPSVEVLAEYTLLSNESTKFCSTIENTENEGQCQTGQKVIVAVKQGNLLATAFHPELTSDTRWHSYFLKMLGENGHQSLVPVKVKQDPENSLSSSQIRDLPIFQQTEVLSFEL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
557		33		66	0.997452
682	87		12		0.992554
683		87	12		0.992554
684	87		12		0.992554
685	75	12	12		0.975346
688		12		87	0.992554
689	12	87			0.992554
749		86	13		0.999973
754	86			13	0.999973
755			86	13	0.999973
756	86		13		0.999973
757	11		88		0.999952
758		11		88	0.999952
759			11	88	0.999952
761	76		11	11	0.999894
762	11	88			0.999952
764			11	88	0.999952
767			91	2	0.99441
773		91	8		1.0
775		2	5	91	0.995208
836	91		8		0.999807
1192		14		85	0.993533
1200	20			80	0.995493
1202			80	20	0.995493
1203	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain