SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16321

Length: 1060 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16321

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	coatomer delta subunit, putative	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	85%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	Golgi-associated vesicle	GO:0005798	Cellular Component	85%
Blast2go	clathrin adaptor complex	GO:0030131	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Longin-like	IPR011012	-	0.0	85%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9J3

Fln msg: Distance to subject end: 251 aas, your sequence is shorter than subject: 277 - 529

Fln protein: MVVLAASIITKTGKALVSRQFVDMSRIRIEGLLAAFPKLVGIGKQHTYVETENVRYVYQPMEALYLLLVTNKQSNILEDLETLRVLSKIVPEYSASLDEEGICRMAFELIFAFDEVISLGHKENVTIAQVKQYCEMESHEERLHKLIMQSKINETKDVMKRKASEIDKSKIDRNRSDKGGLMSLQSSMSTRIENGFSDMSISGSGGGFGSNSSYGSMDLDSFSSKSKGRTTTAATAPSKGLGMQLGKAQKTNQFLESLKAEGEVIVEDVQPVVGQSR

Protein Length: 278

Fln nts: CGTCGTGACCTTGGTGTCACTCAATTTTTCACGGGAATACTCAGTCCGCGCAATATCGTCGGGGGAAATTAGAGTTTTTACCTCTAAATCCTCAGATCCTGGAGAGCTCTCAAGGGAAGATCGAGCAATGACGGGGGTTTTGTAAGTGCGATTCAAAGTTTTCATCTGTCCTTTAATTCTTTGCGGCGATCGACTGAGAACATTCTGGAATTATCGGGATCTTTAAA_-_ATGGTGGTTCTTGCAGCATCCATCATTACCAAAACAGGGAAAGCTCTGGTATCTAGGCAGTTTGTTGACATGTCAAGAATCAGGATTGAAGGATTGCTTGCAGCTTTCCCTAAATTGGTTGGCATTGGAAAACAACATACATATGTAGAGACAGAAAATGTTCGTTATGTGTACCAGCCCATGGAAGCTCTGTATTTGCTGCTTGTTACCAACAAGCAGAGCAATATCCTTGAGGATCTGGAAACCTTGAGGGTGCTTTCCAAAATTGTGCCTGAATACTCAGCTTCATTGGACGAAGAAGGGATTTGCAGAATGGCCTTTGAGCTAATCTTTGCCTTTGATGAAGTCATCTCCCTGGGGCACAAAGAGAACGTCACAATTGCACAAGTCAAACAATACTGTGAGATGGAGAGTCATGAAGAACGACTCCACAAGCTAATAATGCAAAGCAAGATAAATGAGACAAAGGATGTTATGAAACGAAAAGCAAGTGAGATTGATAAAAGCAAGATTGATAGGAACAGGTCTGATAAAGGAGGCTTAATGTCATTACAATCATCTATGTCAACAAGAATTGAAAATGGTTTTAGTGATATGAGTATATCTGGTAGTGGAGGTGGCTTTGGAAGCAACTCTAGTTATGGATCAATGGATTTAGATTCATTTTCAAGTAAATCAAAAGGTCGTACAACCACAGCTGCCACAGCTCCTTCTAAGGGTCTTGGAATGCAACTGGGCAAGGCTCAAAAAACAAACCAGTTTTTGGAATCTTTGAAAGCAGAAGGAGAAGTTATTGTTGAGGATGTGCAGCCAGTTGTGGGCCAATCTAGAGG

Fln Alignment:

sp_v1.1_unigene16321___MVVLAASIITKTGKALVSRQFVDMSRIRIEGLLAAFPKLVGIGKQHTYVETENVRYVYQPMEALYLLLVTNKQSNILEDLETLRVLSKIVPEYSASLDEEGICRMAFELIFAFDEVISLGHKENVTIAQVKQYCEMESHEERLHKLIMQSKINETKDVMKRKASEIDKSKIDRNRSDKGGLMSLQSSMSTRIENXXXXXXXXXXXXXXXXXXXXXXMDLDSFSSKSKGRTTTAATAPSKGLGMQLGKAQKTNQFLESLKAEGEVIVEDVQPVVGQSR
D5A9J3_______________MVVLAASIITKTGKALVSRQFVDMSRIRIEGLLAAFPKLVGIGKQHTYVETENVRYVYQPMEALYLLLVTNKQSNILEDLETLRVLSKIVPEYSASLDEEGICRMAFELIFAFDEVISLGHKESVTIAQVKQYCEMESHEERLHKLIMQSKINETKDVMKRKASEIDKSKIDRNRADKGGLMSLQSSMSTRIENGFNDMSISGSGGGFGSNSSYGSMDLDSFSTKSKGRTSTAATAPSKGLGMQLGKAQKTNQFLESLKAEGEVIVEDVQPVVGQTR

SNPs (tot: 3)

Position	A %	C %	T %	Probability
387	90		10	0.90298
980	37	12		1.0
981	28	71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain