SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16317

Length: 960 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene16317 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Disease resistance associated protein (Fragment) n=1 Tax=Picea abies RepID=Q2VWL9_PICAB	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	leucine rich repeat-like protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	defense response	GO:0006952	Biological Process	74%
Blast2go	apoptotic process	GO:0006915	Biological Process	74%
Blast2go	ATP binding	GO:0005524	Molecular Function	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKS2

Fln msg: W2: There is no M at the beginning,

Fln protein: VNENLKVLIVINYGSKRATVNGLPRLSSLTQLKAIRLERLHVPALHEHSKVLQNLEKLSLSLCEGLGSMSLFNNIQSSLKLPSMLDFNLDHCCDLEELPPGICDMSSVENWTITNCHLLRNLPDNLGKLSSLRMLRLSACVGLKELPESIGKLAKLEYLDISLCECLKELPEEMGKLRNLEELDMRECSRLRKLPRSVGGMKSLKRVICDEKIAQQWNRVKNSAMMELIVEVAEAHFSLDWLDG*

Protein Length: 246

Fln nts: CGTTA_-_ATGAAAACCTGAAAGTTCTAATAGTAATCAATTATGGCTCTAAGAGAGCCACAGTGAATGGTCTGCCAAGGTTATCTTCACTTACTCAGCTCAAGGCTATTCGCTTGGAGAGGTTGCATGTGCCCGCACTTCACGAGCATTCTAAAGTCTTGCAAAACTTGGAGAAGCTATCTTTGAGCTTATGTGAAGGGCTTGGAAGTATGTCACTGTTCAACAACATCCAGTCGAGCTTAAAGCTTCCAAGCATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGAGGAGTTGCCCCCTGGTATTTGTGACATGTCTTCAGTTGAAAATTGGACTATCACTAATTGTCACCTTCTTCGAAATTTACCTGATAACTTGGGGAAGCTCAGCTCTTTAAGAATGTTGAGGCTATCTGCATGTGTAGGCCTAAAAGAGCTTCCAGAGTCCATTGGGAAACTTGCAAAGCTGGAATATCTGGACATTTCGCTATGTGAGTGCTTAAAAGAGCTTCCCGAGGAAATGGGAAAACTAAGGAATCTTGAGGAGCTTGACATGAGAGAGTGTTCCCGGTTGAGGAAATTGCCTAGATCAGTTGGAGGGATGAAATCTCTAAAGCGTGTTATTTGTGATGAGAAGATTGCACAGCAATGGAATCGTGTCAAGAACTCTGCTATGATGGAGCTTATAGTTGAAGTTGCGGAAGCACACTTCAGCTTGGATTGGCTCGATGGTTGACATCCTACGTGGTAAACAGTCTTTTATTTTCATGCTAATGAATCTTGGTTTTGATGTGGCTTTGACATTGTAATATTGTTTCGTTTATATTATCCTACGATGCCGTGTGTATAGCAACATAGATGCTATACAAGAAAACTGAAGGCAACTCTCTTCAATAACTATGGATAATAACCAATTAAATTACATCGGGCAGCTAATAACAGAAATCCTGACTCAACTAC

Fln Alignment:

sp_v1.1_unigene16317___LKVLIVINYGSKRATVNGLPRLSSLTQLKAIRLERLHVPALHEHSKVLQNLEKLSLSLCEGLGSMSLFNNIQSSLKLPSMLDFNLDHCCDLEELPPGICDMSSVENWTITNCHLLRNLPDNLGKLSSLRMLRLSACVGLKELPESIGKLAKLEYLDISLCECLKELPEEMGKLRNLEELDMRECSRLRKLPRSVGGMKSLKRVICDEKIAQQWNRVK-NSAMMELIVEVAEAHFSLDWLDG
A9NKS2_______________LKVLIVFNYGSKRATVNGLPMLSSLTQLKTMRLERLIVPPLHEHSKVVQNLEKLSLSLCEGLGNMSRFNGTQSNLKLPIMLDFNMDHCCDLEELPLGICDMSSVQKWSITNCHLLQKLPDDLGRLSSLRMLRVSACLGLKELPTSIGKLGKLEYLDISLCECLKELPEEIGQLKKLEELDMRECSRLRKLPKSVGGLRSLKHVICDEKIGQQWSRVKSSSAIMDLRIEVVEAHFSLDWLDG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
591	85		14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain