SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16316

Length: 1634 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16316

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	porin/voltage-dependent anion-selective channel protein	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	porin voltage-dependent anion-selective channel protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	anion transport	GO:0006820	Biological Process	77%
Blast2go	transmembrane transport	GO:0055085	Biological Process	77%
Blast2go	voltage-gated anion channel activity	GO:0008308	Molecular Function	77%
Blast2go	mitochondrial outer membrane	GO:0005741	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Porin, eukaryotic type	IPR001925	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEE9

Fln msg:

Fln protein: MGKGPGLFSNIGKKARDLLTKDYSYDQKFAVATYSDDGLGITSTGMNKGGLFCGDIATLYKYQKSTIDVKVDTNSNISTTITIDEVIPGAKTVFSFKLPDDKSGKLEVQYLHEHVGLSSSIGLTPKPVVDFSTAIGSDVFTVGGEVGFDTSSGLFTKYNAGIGITKPEFSAAVIFADKGDTLKASYLHELNPITKTCFAAEISRKFSANQNTFTVGSSYALDPLTTMKTRLNNHGKLGTVLQHEWKPKSLITLSSEFDTKALDKSPKIGLALAYKP*

Protein Length: 278

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAGTCGAAGAAATGAGCAGAGACCATAATACTATTCAAAATTGATAGGGTTATTCAACTTTAATGCCCACGTTTGACCCGCTTTAATCGTAGATTTGCAGTGACCTAATTATCGGTCTCGCTATTTCTGTTTCTTTCCTTCAATTGTTTCGCACTGCATTGTATCGCCAGGTCGCGAGATCGACCCTCGGTGGAGCTGAACTGGCCGGCCAGTAACACTTGCAGCCAGACGCTCCATTGAATCTTCCCCCCCTCGAGCACGAGCTATTGCGATCTATCGGAAAG_-_ATGGGCAAGGGACCTGGATTGTTTTCCAACATCGGGAAGAAGGCCAGAGATCTTCTCACGAAGGATTACAGCTATGACCAGAAGTTTGCTGTGGCTACATACAGTGATGATGGGTTGGGTATTACATCAACTGGCATGAACAAAGGAGGGCTTTTCTGTGGTGACATCGCTACACTCTACAAGTATCAGAAGTCAACCATCGACGTTAAAGTGGACACAAATTCCAATATTTCAACTACAATCACCATTGATGAAGTCATACCAGGTGCCAAGACTGTTTTTAGCTTCAAATTGCCAGACGATAAATCTGGCAAGTTGGAGGTTCAATACTTGCATGAACACGTGGGCTTGAGCTCAAGCATTGGTTTGACTCCCAAGCCTGTAGTTGACTTTTCTACGGCAATAGGAAGCGACGTATTTACTGTTGGTGGTGAAGTAGGCTTTGACACTTCATCAGGATTGTTCACGAAGTACAATGCAGGCATTGGCATTACAAAGCCTGAATTCAGTGCCGCTGTTATATTCGCTGACAAGGGAGACACTTTGAAAGCTTCATATCTCCATGAACTGAATCCCATTACAAAAACTTGTTTTGCTGCTGAGATTTCACGCAAGTTTTCAGCAAATCAAAACACTTTCACAGTGGGAAGTTCTTATGCCCTTGACCCCCTCACCACCATGAAAACACGGCTCAACAACCACGGGAAGCTTGGCACAGTTCTCCAGCATGAATGGAAGCCTAAATCCTTGATAACTCTTTCTTCAGAGTTTGACACAAAGGCACTTGATAAGTCCCCCAAGATTGGTTTGGCTTTAGCATATAAGCCGTGA___GATTGTAACCATTCCAAAAGCTTAGTCTGTTATGCTTCTTGACAGGAAGCACCAAATACCTATTTTTTTCTCCCTGTTTTTTCAAAATACTGTTCGACGGCAATATGTTTACGGCCTCTAAAGAATTTTGAACACCTTTGTTACTGCGCAAGTGCACAGGAATAATAAACATCGAGAATTCGCTCATTCGGGATATTCATTTCATAATAATACAAGAATCGTGGTTTGAATATAGTTATACAATTTGTTGGCCTCCAATGGAAGCAGTAGTGTTTCTTGTATCATAGGATTGAATGCGTCCTGATAGTGTCCTATTATACTGATTCGGCTATCCTGGAAATGGTTCTATTTGATCCATTCAGTGTGTTCTAACTGTGGCTCTTTTGCATATAATAATCTCCGTGTGCATAGTTTTGATTTGCAAGTAGATTGGTGAATGTATTCAAAATGTAATAGGTCCTGTGCAAGTTTATTATATAAAAGGATTGCGTTGT

Fln Alignment:

sp_v1.1_unigene16316___MGKGPGLFSNIGKKARDLLTKDYSYDQKFAVATYSDDGLGITSTGMNKGGLFCGDIATLYKYQKSTIDVKVDXXXXXXXXXXXDEVIPGAKTVFSFKLPDDKSGKLEVQYLHEHVGLSSSIGLTPKPVVDFSTAIGSDVFTVGGEVGFDTSSGLFTKYNAGIGITKPEFSAAVIFADKGDTLKASYLHELNPITKTCFAAEISRKFSANQNTFTVGSSYALDPLTTMKTRLNNHGKLGTVLQHEWKPKSLITLSSEFDTKALDKSPKIGLALAYKP
D5AEE9_______________MGKGPGLFSNIGKKARDLLTKDYSHDQKFAVTTYSEDGLGITSTGMNKGGLFCGDIDTHYKYQNSTINVKVDTNSNISTTITIDEVLPGAKTVLSFKLPDEKSGKLDFQYSHEHVGLSSSVGLTPKPQVDFSGAIGSDVFTVGGEVGFDTSSGLFTKYNGGIGITKPEFSAAILFADKGDTLKASYLHELNPITKTCFAAEISRKFSANQNTFTVGSSYALDPLTTMKTRLNNHGKLGTVLQHEWKPKSLITLSSEFDTKALDKSPKIGLALAFKP

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
696		5		95	0.997749
1249		8		92	0.999718
1250			8	92	0.999718
1251	92			7	0.999664
1255	8	92			0.999718
1260	92			8	0.999718
1261	92		8		0.999718
1262	92		8		0.999718
1263		8	92		0.999718
1264	92			8	0.999718
1265	92		8		0.999718
1267		8		92	0.999718
1268	8			92	0.999718
1269		8		92	0.999718
1270			92	7	0.999664
1271	92	7			0.999602
1410			77	22	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain