SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16313

Length: 1495 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16313

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine-type peptidase	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	serine-type peptidase	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	0.0	80%
Blast2go	Peptidase S24/S26A/S26B/S26C	IPR015927	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD73

Fln msg:

Fln protein: MASLSTWLRYIVHKIEYSVSLSTKNYQIGQITDKQVNENVWKNVFQGKLTYVHFNKGEEMAPTLSGQGGSLLVRRLPTADPKKVFVGDVVALKDPQNPDNCIVRRLAAVEGDEMVSTDEKDEPFVLENDQCWVVSDNESLSPKVLEAADSRIFGPVPMSDILGRVIYCLRSSVDHGPIRNSESAMQRDSPVLAVELDIDELARSPKT*

Protein Length: 209

Fln nts: ATGGGGAACCATTCATTCATGTAAACCAAGGTCGAGAAGGTGGGGAGGGTCCTTCCGTGCAATTTTTATGGTTAGCGTGGCAAGATGGCACGAGACAACGAGATCCCATACATACATAACTAATGTCCATTCAATACAAAAGCCCTATACATGGCTAATGGCCATTCAATTCAAAAGCCCTCTGCTGTCCTTCTGTAACAAACCCTTTCTCAGAATTTGAGTGCATCAACTCTAATCTTGTAATCGGTAGACCATCTGTAATTGGCTTTCATTTCCATTTTTTTGGGGTTGCGATGCGTCCTTGAGGAGGAGGAGCACTGCCACAAGACAAGAT_-_ATGGCTTCCCTCTCTACCTGGCTTCGCTATATTGTCCACAAGATAGAGTACTCGGTTTCCCTCAGCACGAAGAACTACCAAATAGGCCAGATTACGGATAAGCAAGTGAACGAAAATGTATGGAAGAATGTGTTTCAAGGAAAATTGACATATGTGCATTTTAACAAAGGGGAAGAGATGGCCCCGACTTTGTCAGGTCAGGGTGGGAGTTTGCTTGTTCGAAGACTACCCACTGCAGATCCAAAGAAAGTTTTTGTTGGTGATGTTGTTGCATTGAAAGATCCTCAAAATCCAGATAACTGCATTGTTCGAAGATTGGCTGCAGTGGAAGGGGATGAAATGGTGTCTACTGATGAGAAAGATGAACCTTTTGTGCTGGAAAATGATCAGTGCTGGGTTGTTTCTGATAACGAGTCCTTAAGTCCGAAGGTACTGGAGGCTGCAGATAGTCGAATATTTGGACCAGTACCAATGAGTGACATCTTGGGTAGAGTGATCTATTGCCTGCGCTCTTCTGTGGACCATGGTCCCATCAGAAACAGTGAAAGTGCAATGCAGAGAGATTCTCCAGTCTTGGCTGTGGAGTTGGATATAGATGAATTGGCAAGGAGCCCCAAGACATGA___TGCTGGCATAATCCATATAGGCCTGATTAACACGTCTTGTAAATTTTAAAGTTCCTCTTTTGTGAGGCATGGTTAAATGTTTTCTGCCTTTATTGAAGGTAAGAATGAAGTATAAAGGTTTATGATGATGTGTGCAAAAAGATTATGATCCTGCATGATTTCTCGTTGATTACTGAATTTTATTGAAGAACCCAATTGAATTTCTTCTCTTATTCAAAACGCTTATTTCATGGTATGAAGCTGGATTCTCAATCAAGTTGATGTCCACTATAAGAGATATGTATTGTACAGAGCAGTCTAAGCAAAAGTTAGAACAATGACAAATTAAGCACATACTAAGGTTACAGGTAGGTGCAGCAATGATTGTTGACATTTGATATGCTGCCCAGACAGAATGCAGCTTCTTGCTATTAGTTTTATGTTTGTCTTATGATTTCTTATTTGCTTCCTGGATGTTTAGTAAGACATTGGTTGGATTAAAGGCCTGCCTAGAATACACATTGAAATTAACCTTGAAATAAGATCTGTTGTGTTGAG

Fln Alignment:

sp_v1.1_unigene16313___MASLSTWLRYIVHKIEYSVSLSTKNYQIGQITDKQVNENVWKNVFQGKLTYVHFNKGEEMAPTLSGQGGSLLVRRLPTADPKKVFVGDVVALKDPQNPDNCIVRRLAAVEGDEMVSTDEKDEPFVLENDQCWVVSDNESLSPKVLEAADSRIFGPVPMSDILGRVIYCLRSSVDHGPIRNSESAMQRDSPVLAVELDIDELARSPKT
D5AD73_______________MASLSTWLRYIVHKIEYSISLSSKNYQIGQITDKQVNENVWKNVFQGKLTYVHFNKGEEMAPTLSGQGGTLLVRRLPTADPKKVFVGDVVALKDPQNPDNCIVRRLAAVEGDEMVSTDEKDEPFVLENDQCWVVSDNESLSPKVLEAADSRLFGPVPMSDILGRVIYCLRSSVDHGPIRNSETAMHKDSPVLAVELDIDEMARSPKT

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
840	10	90			0.90298
904		90	10		0.999898
905	90			10	0.999898
907		10		90	0.999898
917		10	90		0.999898
1007	87		12		0.999964
1008	87			12	0.999964
1009	87	12			0.999964
1010	12		87		0.999964
1011		12		87	0.999964
1014	12	87			0.999964
1194		8		91	0.999807
1300	10		90		0.999898
1447	40		60		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
304	315	GAG GAG GAG GAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain