SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16303

Length: 1504 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16303

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Succinic semialdehyde reductase isofom1 n=1 Tax=Solanum lycopersicum RepID=B1Q3F6_SOLLC	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	2-hydroxy-3-oxopropionate reductase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:1.1.1.3-	-	0.0	88%
Blast2go	3-hydroxyisobutyrate dehydrogenase.	EC:1.1.1.31	-	0.0	88%

Source	KEGGs	Term	Type	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280		88%
Blast2go	Metabolic pathways	01100		88%
Blast2go		EC:1.1.1.6-	-	88%
Blast2go	Phosphogluconate dehydrogenase (decarboxylating).	EC:1.1.1.44	-	88%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	88%
Blast2go	Glutathione metabolism	00480	88%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	88%
Blast2go	Biosynthesis of plant hormones	01070	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	88%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	88%
Blast2go	pentose-phosphate shunt	GO:0006098	Biological Process	88%
Blast2go	valine metabolic process	GO:0006573	Biological Process	88%
Blast2go	3-hydroxybutyrate dehydrogenase activity	GO:0003858	Molecular Function	88%
Blast2go	3-hydroxyisobutyrate dehydrogenase activity	GO:0008442	Molecular Function	88%
Blast2go	2-hydroxy-3-oxopropionate reductase activity	GO:0008679	Molecular Function	88%
Blast2go	phosphogluconate dehydrogenase (decarboxylating) activity	GO:0004616	Molecular Function	88%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	88%
Blast2go	cytosol	GO:0005829	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	3-hydroxyisobutyrate dehydrogenase-related, conserved site	IPR002204	-	88%
Blast2go	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	88%
Blast2go	6-phosphogluconate dehydrogenase, C-terminal-like	IPR008927	-	88%
Blast2go	Dehydrogenase, multihelical	IPR013328	-	88%
Blast2go	3-hydroxyacid dehydrogenase/reductase	IPR015815	-	88%
Blast2go	NAD(P)-binding domain	IPR016040	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNG8

Fln msg:

Fln protein: MEVGFLGLGIMGKAMAVNLLRNGFKVTVWNRTMSRCEELVEQGASIGSTPAEVVKKCNYTIAILSDPPAALSVVFGKDGVLEQMCTGKGYIDMSTVDTITSTKINEAIIEKGGRFLEAPVSGSKKPAEDGQLIILAAGDKTLYDEIIPSFDVMGKKAFFLGEVGNGAKMKLVVNMIMGSMMNAFSEGLVLADKSGLSQTTLLDVLELGAIANPMFKLKGPAMIQEKFPAAFPLKHQQKDMRLALALGDEVEVSMPVAAAANEAFKKAKSLGLSDQDFSAVYQVVKEPSAGTKV*

Protein Length: 295

Fln nts: ATGGGGAGAATATGTGTAGTGGCGTTTAGTCACGCATATGAAAAAGACTATAGAGATTCCGATTCCCTCGAAAGTGTGATCTACAGTTCTTACATGTATTTTTAATATCTATGATAGATAACAGGCGACAAGGAGACAGTAACAGAGGAGGCCTTACTATGAGCATTCTGTAAATCTCTGTTTCTGGAAAACAATTAGAACAACAAATCAGAAGCTCAGGGAAAATTTTCATCCATAACAAAAGC_-_ATGGAGGTCGGTTTCTTGGGCTTGGGAATTATGGGCAAGGCAATGGCAGTAAATCTACTCCGAAATGGCTTCAAAGTGACCGTGTGGAATAGGACAATGTCTAGGTGTGAAGAACTTGTTGAGCAAGGTGCTTCCATAGGAAGCACTCCTGCCGAAGTTGTAAAGAAGTGCAACTATACCATAGCCATCCTCTCTGATCCTCCTGCTGCCCTCTCGGTGGTTTTCGGCAAGGATGGTGTCCTAGAGCAAATGTGTACAGGAAAAGGATACATTGACATGTCAACAGTTGATACTATCACTTCAACAAAGATCAATGAGGCAATCATTGAAAAGGGGGGGAGATTTCTTGAGGCTCCTGTCTCAGGCAGCAAGAAGCCCGCAGAAGATGGCCAACTGATTATTCTTGCTGCTGGTGATAAGACCTTGTATGATGAGATCATACCTTCCTTTGATGTAATGGGGAAGAAAGCCTTCTTTCTAGGGGAGGTTGGAAATGGAGCTAAGATGAAGCTTGTTGTCAACATGATTATGGGCAGCATGATGAATGCATTTTCTGAAGGCCTTGTCCTAGCTGATAAGAGTGGATTAAGCCAGACAACACTATTAGATGTCTTGGAATTAGGCGCAATTGCTAATCCAATGTTCAAGTTGAAAGGTCCAGCTATGATTCAAGAGAAGTTTCCCGCAGCATTTCCTTTGAAGCACCAACAAAAGGATATGCGATTGGCACTTGCTCTTGGAGATGAGGTCGAAGTATCTATGCCTGTAGCTGCTGCTGCTAATGAGGCTTTCAAGAAGGCCAAAAGCTTGGGGCTTAGTGATCAAGACTTTTCAGCTGTGTATCAGGTAGTGAAGGAACCGAGTGCAGGAACTAAAGTCTAA___TGGGGAATCCATGTATTGGATCATTATTACTGTGCAATGCTTTTGTCTTGCATATGCCATTTGCCTCTGGAGCATTTTGCCTTCAGGCAAATTAAAGATAATGGACATGCAGATGGCATGGTTCTTAGTATTGGAAACTTTGTAAGTCAGAAAGTTCAGTTGACATGGTTGAGTTTCAGAGAGTCAGTTTCTAACTTCCTTCAAATGTTTGGGACAGTATGATTAATAGATCTTTATATTTTGTGTTTGCATGTATGCATGCCATCACCTTCTATCTTTAATGAATATTTTGAGTATGATTCACCATATCCTGAATTATTTCAAAGCATTTTCACTTGAATCTGTCACCGCCTTTGTAATTAACAACCAAGGCATAG

Fln Alignment:

sp_v1.1_unigene16303___MEVGFLGLGIMGKAMAVNLLRNGFKVTVWNRTMSRCEELVEQGASIGSTPAEVVKKCNYTIAILSDPPAALSVVFGKDGVLEQMCTGKGYIDMSTVDTITSTKINEAIIEKGGRFLEAPVSGSKKPAEDGQLIILAAGDKTLYDEIIPSFDVMGKKAFFLGEVGNGAKMKLVVNMIMGSMMNAFSEGLVLADKSGLSQTTLLDVLELGAIANPMFKLKGPAMIQEKFPAAFPLKHQQKDMRLALALGDEVEVSMPVXXXXXXXXXXXXSLGLSDQDFSAVYQVVKEPSAGTKV
A9NNG8_______________MEVGFLGLGIMGKAMAVNLLRNGFKVTVWNRTLSRCEELVEQGASMGSTPAEVVKKCKYIIAMLSDPPAALSVVFGKDGVLEQMCTGKGYIDMSTVDTVTSTKISEAIIEKGGRFLEAPVSGSKKPAEDGQLIILAAGDKSLYDEVMPSFDVMGKKAFFLGEVGNGAKMKLVVNMIMGSMITAFSEGLALADKSGLSQTTLLDVLELGAIANPMFKLKGPAMIQEKFPTAFPLKHQQKDMRLALALGDEVEVSMPVAAAANEAFKKGISLGLSDQDFSAVYQVVKESSAASKV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1197			90	9	1.0
1381	8		91		0.999766
1382	8			91	0.999766
1432	11	11	77		0.968132
1433		77	22		0.999999
1434	22	11	66		0.999999
1438	12	87			0.992554
1440	12			87	0.992554
1441	12		87		0.992554
1457			25	75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1014	1025	GCT GCT GCT GCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain