SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16296

Length: 1612 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16296

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NADH-ubiquinone oxidoreductase 24 kD subunit, putative n=1 Tax=Ricinus communis RepID=B9S4S0_RICCO	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	0.0	91%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	91%
Blast2go	Metabolic pathways	01100		0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrial electron transport, NADH to ubiquinone	GO:0006120	Biological Process	91%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	91%
Blast2go	NAD binding	GO:0051287	Molecular Function	91%
Blast2go	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	91%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	91%
Blast2go	respiratory chain complex I	GO:0045271	Cellular Component	91%
Blast2go	mitochondrion	GO:0005739	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	NADH:ubiquinone oxidoreductase, 24kDa subunit	IPR002023	-	91%
Blast2go	Thioredoxin fold	IPR012335	-	91%
Blast2go	Thioredoxin-like fold	IPR012336	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0K3

Fln msg:

Fln protein: MFGIAEVARRAAVRLRVRVNPGLRHFSTALNYHLDSPDNNPNTPWDFTEANKERVKEIITHYPSNYKQSAVISLLDLAQQQHGGWLPVSAMNKVAEVLGMAPIRVFEVATFYTMFNRTKVGKYHLLVCGTTPCMIRGSRDIEGAILKHLGVKRNEVTKDGMFSVGEMECMGCCVNAPMIAVADYTKGSEGFTYNYYEDVTPKRVVEIVEMLRRGETPPVGTQNPERIRAGPAGGNTTLLSEPKPPPCRDLDSC*

Protein Length: 255

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATTTGATTGTGTTATTATTTATGTAAATTGAGAGGAAAACAGTTTGTTAAATGTCAGGCACGTGACCTTGGCTGTCAATTTGGTTTGTGCTTGATTTGGAAGTATGGTGAGGTAACGCTGGATCGTACATATTAAAATAGACTTCAAAGAAATATACTTCAAAGAAGTGGGCTTAAGAGTTCAATTCCCGTCGAGGATCAACAGCAGACCATCGACGAGAAACGAAG_-_ATGTTTGGGATTGCAGAGGTAGCGCGCAGGGCAGCGGTGAGGCTTAGGGTCAGGGTCAATCCAGGGCTTCGCCATTTCTCCACGGCCTTGAATTATCATTTGGACTCTCCAGATAACAATCCCAACACGCCATGGGATTTCACAGAAGCCAATAAAGAGAGGGTGAAAGAAATAATAACTCACTATCCATCAAATTACAAGCAATCTGCAGTTATTTCTCTTCTGGATCTTGCACAACAACAGCATGGAGGTTGGCTACCCGTGTCAGCTATGAATAAGGTTGCAGAGGTTCTTGGAATGGCTCCAATTCGTGTATTTGAAGTGGCAACTTTCTACACTATGTTTAACCGGACAAAGGTGGGTAAATATCATCTTTTAGTCTGTGGTACTACCCCTTGTATGATACGGGGGTCACGTGACATTGAAGGGGCAATATTGAAGCACCTTGGTGTGAAACGAAATGAGGTAACCAAGGATGGCATGTTTTCAGTAGGCGAAATGGAGTGCATGGGATGCTGTGTCAATGCTCCAATGATTGCTGTAGCCGATTACACAAAGGGTTCAGAAGGATTTACATACAACTACTATGAGGATGTTACACCAAAGCGTGTTGTTGAGATAGTTGAGATGCTGAGGCGAGGCGAAACTCCTCCAGTCGGAACACAGAATCCAGAACGTATTAGAGCAGGTCCAGCTGGTGGCAACACTACATTACTTAGTGAACCAAAGCCTCCACCATGTCGTGACTTGGATTCATGTTAA___TGTGACACAATTTGAAATATTTTATTGTCAGTGCAATAAAATAAAATCATTATGCAATTTGGTCAATTCCTGAGAATGCGAGTATCTGCAAATAAAACTGTCATGGAATTAATTGTGAAAACCCTTGCAAGTGTTTCCTGGATTTAGCCTCTGGTAAATGCTTGAATTTCACTGCTCCAAATTCAGTATCTCATTATATTTCTATTGATCCTCAGTCTTTCCTATAAAGCCAATTCATATCATTGGTTTTATTTCTACAAAGATACTTTGAACTTGCACATGAAATCTTGGTGAATTCATGTGAGGAACTATACATTGTAGCAACTTGACGGGGAATCATCAAATTTTTGTTTTACATGTTGCAGTTATTTACTGTGATGAGTGAAGTGTTGTTGCAATCTATTCATTGCACCAGCATACTCACTACTATTTCTTCAGTTCTGTGTTTTTCCAGGATTGACTACACGCTTTTGGGCTGTTGAGACCAATATTTGAACATTATATGCAAGCTGTGAAGGCCAAACTTTATTAGAGGATGAACCGTTGATGTCTAAACAATCACTAATGAAATTTTTTATTGGTTTTCTCTAAAAAAA

Fln Alignment:

sp_v1.1_unigene16296___MFGIXXXXXXXXXXXXXXXNPGLRHFSTALNYHLDSPDNNPNTPWDFTEANKERVKEIITHYPSNYKQSAVISLLDLAQQQHGGWLPVSAMNKVAEVLGMAPIRVFEVATFYTMFNRTKVGKYHLLVCGTTPCMIRGSRDIEGAILKHLGVKRNEVTKDGMFSVGEMECMGCCVNAPMIAVADYTKGSEGFTYNYYEDVTPKRVVEIVEMLRRGETPPVGTQNPERIRAGPAGGNTTLLSEPKPPPCRDLDSC
A9P0K3_______________MFGIAEVARRAAVRLRVRVNPGVRHFSTALNYHLDSPDNNPNVPWEFTEANKERVKEIITHYPSNYKQSAVITLLDLAQQQHGGWLPVSAMNKVAEVLEMAPIRVFEVATFYTMFNRTKVGKYHLLVCGTTPCMIRGSCDIEGAILKHLGVKRNEVTKDGMFSVGEMECMGCCVNAPMIAVADYTKGSEGFTYNYYEDVTPKRVVEIVEMLRRGETPPVGTQNPDRIMAGPAGGNTTLLSEPKPPPCRDLDSC

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
168			75	25	0.996473
180	75	25			0.996473
187	25			75	0.996473
190	71		28		1.0
191	85		14		0.993533
197			85	14	0.993533
203	85	14			0.993533
217		85		14	0.993533
912		93		6	0.999264
1362	5			84	0.999846
1424		11		88	1.0
1438	12			87	1.0
1511	13		86		1.0
1524	86	13			1.0
1525	86			13	1.0
1526			86	13	1.0
1542		61		38	1.0
1559		57		42	1.0
1561	42		57		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain