SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16286

Length: 1860 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16286

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_25.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TV44_VITVI	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	proline-rich family protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Uncharacterised protein family Cys-rich	IPR006461	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ96

Fln msg:

Fln protein: MVSNEYVEKMQQRQQYRNLWHTDLLSTITADTPYCCFSLFCGPCASYLLRKRALYNDMSRYVCCAGYMPCSGSCGESQCPEFCLCTEVFCCFGNSVASTRFLLQDEFNIQTTKCDNCIIGFMFVLQQLACIFSIIACIVGSDELQAASNLLNCLSDGVYCTVCACMQTQHKVELDKRDGKFGPVERVMQAPGMQQMSRIDQSIPPNVGYAPYPAQPPYGQPAYPQPYGYPAQSYPPQGYPSSGYPPSGYPPAGYQK*

Protein Length: 258

Fln nts: ATGGGGGAAAATCTTATAATAATAGCTCATCAAATGGCTGTCAATCTATATTATGGTCTCTGTTATTTTTAATTTTCCGCATTTTCTGCCTTTATCGGAGGCGAGGCGAGGCGCCCAAGGTTCGAACCTCATCCCCGATTCCTGAGTTTCAAAATCAGTACATATCCGTCGTTTTCGTTTCCAACTCATCCATGATCCATCACTAGTGACAAACACCAGGAAGCTTCCCCCTTTTCTAGTTTCCTCTCCCTTAGACCCAGTAAACACAGATAGCGGATCTATTTTCTTGCCGTTCGCCTGCAGTTGAAAAGTCAATTGGCCCGGGTTCAAGTCTGCCACGAAGAGCCACTAAGCCAGAAGGATACGAAGCTCCTCGGGTCAATATTCTTTGGTGGACTTGACTTTGGAGGAAATTTAACAGGGCATTCATTGTTAACTTCACATCGGCCAAG_-_ATGGTGTCGAATGAGTATGTGGAGAAGATGCAACAACGCCAGCAATATCGCAACCTCTGGCACACAGATCTCTTGAGCACAATCACCGCGGATACACCCTACTGCTGCTTCTCATTGTTTTGTGGACCATGTGCCTCTTATTTACTGCGGAAGCGAGCACTATACAATGACATGTCAAGATATGTTTGCTGTGCTGGTTACATGCCCTGCAGTGGTAGTTGTGGTGAAAGTCAGTGTCCTGAGTTTTGTCTGTGCACAGAGGTTTTCTGCTGCTTTGGAAATTCTGTTGCTTCTACTCGGTTTCTCTTGCAAGATGAATTCAATATCCAGACAACTAAATGTGACAATTGCATCATTGGCTTCATGTTTGTTCTCCAACAGCTGGCTTGTATCTTCTCTATTATTGCATGTATTGTTGGCAGTGATGAACTTCAAGCTGCCTCAAATTTGTTAAATTGTTTGTCAGATGGTGTTTACTGCACGGTTTGTGCATGCATGCAGACACAACACAAAGTTGAACTGGACAAACGTGATGGCAAGTTTGGACCAGTTGAAAGGGTAATGCAAGCACCTGGTATGCAGCAGATGTCTCGCATTGACCAGAGTATCCCACCAAATGTTGGATATGCGCCCTATCCTGCCCAGCCTCCATATGGTCAGCCAGCATATCCACAGCCATATGGTTACCCAGCACAGAGTTATCCCCCTCAAGGATATCCTTCTTCGGGATACCCTCCTTCTGGATACCCTCCAGCAGGCTATCAAAAATAG___TCAGGGAACTCAATATGAATATTTTTTCTTTTGGGTGAGCAGGAATGGTGGATTTTTGTGTGAATCGTATGTGTGGTTCAGCCAAAGGAATATGGTTATGTACCTGGCTTGGTCTAAACAATATAACATGTTTCAAACAGCTTGTATTAGCTACAGGGAGACTATATACTGTTTTGTTGTGCCACTGCTTTTCTGATTATGAAGTTTCATACCATGCTTGTTAGAGTATCTTTGACTACAGAGAATAAAAAGGTTGTAAATCTCGTTACTACTTTGTGGTGGAAGTTCAATGCATGTAGACCTTAGGTATACATTGTTTTATGGATAAAATGGTATTATGAAACACTTGTAATTAGTAGAACGTAGTTTTATCTTTGAATACAGAGAACTCTCATTATAACTGTGGTGGACGTTCAGTACATTTGGATCTTAGGTTTGCATGTTTTACGGATATTATGGATGTACAGAGTGGTTATTTAGAAACACTTGCAGTTATAGTAGATATGGTTTGCAAGTTCTTTTAACGCCTACATTACTTTTCCCTAACATTGAATATTGATTCGTATCCTTCCTAACGTTGAATATTGGAGGCTTAACTATGGAACAAAATGTTATCCCATACAATGGCTATGAAAAT

Fln Alignment:

sp_v1.1_unigene16286___MVSNEYVEKMQQRQQYRNLWHTDLLSTITADTPYCCFSLFCGPCASYLLRKRALYNDMSRYVCCAGYMPCSGSCGESQCPEFCLCTEVFCCFGNSVASTRFLLQDEFNIQTTKCDNCIIGFMFVLQQLACIFSIIACIVGSDELQAASNLLNCLSDGVYCTVCACMQTQHKVELDKRDGKFGPVERVMQAPGMQQMSRIDQSIPPNV
A9NZ96_______________MVSSEYVEKMQLRQQYRNLWHTDLLHTITADTPYCCFSLFCGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGSCGESRCPELCLCTEVFCCFGNSVASTRFLLQDEFNIQTTQCDNCIIGFMFFLQQLACIFSIIACIVGSDELQAASNLLNCLSDGVYCTVCACMQTQHKVEMDKRDGMFGPVERVMQAPGMQQMSRIDQSVPPPV

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
553	97		2		0.977151
556		97	2		0.977151
670		3		96	0.986325
829			2	92	0.999991
868		2		92	0.98868
1009		11		88	0.923564
1011	88			11	0.923564
1012	88		11		0.923564
1014		11	88		0.923564
1015		11	88		0.923564
1016			88	11	0.923564
1018	88		11		0.923564
1019	88		11		0.923564
1022		88		11	0.923564
1023	88	11			0.923564
1027	87			12	0.992554
1029	12	87			0.992554
1057		87		12	0.992554
1087			76	23	1.0
1099		80		20	1.0
1537	88	11			0.923564
1542		85		14	0.993533
1543		85		14	0.993533
1544	85		14		0.993533
1626	20	10		70	0.999998
1627	80			20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
98	113	GAGGC GAGGC GAGGC G	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain