SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16264

Length: 1347 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16264

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[F] COG0775 Nucleoside phosphorylase	-	-	4.0e-34	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	mta sah	-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	nucleoside metabolic process	GO:0009116	Biological Process	76%
Blast2go	catalytic activity	GO:0003824	Molecular Function	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nucleoside phosphorylase domain	IPR000845	-	0.0	76%
Blast2go	Nucleoside phosphorylase	IPR018017	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL97

Fln msg:

Fln protein: MMKFITAVHCIWALVIVSLMVDLSSVDALIASPKVQRSIHKINRHGPYLGIVVPNAFEMDPLLQSSAFNVSKTLDIAGRRFHIGSVDKHKVIIVMSGLAMLNAGLTTQLLLSFFKVKGVIHYGIAGNANSSLQIGDVTVPRYWAHTGLWNWQRYGDGPNDELSLESNGDYTRKYGYLHFGNFTTPSNQNSSNLLNNVWYQPEEVFPVDGTPEVRQHAFWVPVDKRYYQIAKGLESLELEKCLNSTTCLSNTPKAVLVQRGASANVFVDNAAYRNFLYTKFKISPIDMESAAVALVCLQQRLPFIAIRALSDLAGGGTSERNEAAVFSGLASQNAVTAVIQFIKSL*

Protein Length: 347

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGAATTCGATTTTGAAAGC_-_ATGATGAAGTTTATTACTGCAGTCCACTGTATATGGGCCTTAGTCATAGTATCGTTAATGGTGGATTTATCATCAGTGGATGCCCTAATTGCATCGCCAAAGGTTCAGAGAAGCATCCACAAGATCAATCGCCATGGCCCATATCTCGGCATCGTTGTTCCCAACGCTTTCGAGATGGATCCTCTTCTGCAATCTTCGGCTTTCAATGTCTCCAAGACTCTGGATATTGCTGGGAGAAGATTTCATATAGGAAGCGTTGATAAGCACAAAGTCATCATTGTCATGTCAGGATTGGCAATGCTGAACGCAGGACTAACAACTCAGTTACTGCTGAGTTTCTTCAAAGTGAAAGGAGTCATCCACTACGGAATTGCAGGGAACGCCAACTCTTCTCTGCAAATCGGAGATGTTACAGTTCCTCGTTATTGGGCTCATACTGGCCTCTGGAATTGGCAGAGATATGGAGATGGACCCAATGATGAACTTTCTCTGGAATCAAATGGAGATTACACACGAAAATACGGGTACCTTCACTTTGGAAATTTCACAACCCCGTCAAATCAGAACTCAAGCAACCTCCTTAATAATGTGTGGTATCAACCAGAGGAAGTTTTTCCAGTGGATGGAACCCCAGAGGTCAGGCAACATGCATTTTGGGTGCCTGTCGATAAGCGCTATTATCAGATTGCAAAGGGCCTTGAGAGTCTGGAGTTGGAAAAATGTTTGAACTCAACAACTTGTCTGTCAAATACTCCCAAGGCTGTTCTAGTACAAAGAGGAGCGAGTGCAAATGTGTTTGTGGACAATGCAGCGTACAGAAACTTCCTCTACACCAAGTTCAAGATAAGTCCCATCGACATGGAAAGTGCAGCTGTAGCGCTGGTTTGCCTTCAACAAAGACTGCCATTCATAGCAATAAGAGCTCTTTCTGATTTGGCTGGAGGGGGAACTTCTGAGCGTAATGAAGCAGCTGTCTTTTCTGGGCTGGCTAGCCAAAACGCTGTAACTGCTGTAATTCAATTTATCAAGTCTTTGTAA___CACTGAGTTGTTTCTTACTCCCATCTCTTCAGGGACATGACATTGATTTCTATTGCATATTGCAAAAGTaATTTGAAGGGTGGCAAGGAAGTCAATGAGATGGAGAGGCACACGCATGGCTATTTTGAAAATTCTTATcGTCGCCAGAGCAACTTCATTATAAATTTAGGTtCCTGGgGGGCCCAGTAACAGTGGGGTTAATTGTTGACTTTGTTGTTAAATTGGTTTTCTTCTTAATCGAATTTACAATCAAGTTAAAAATAAG

Fln Alignment:

sp_v1.1_unigene16264___MMKFITAVHCIWALVIVS-LMVDLSSVDALIASPKVQRSIHKINRHGPYLGIVVPNAFEMDPLLQSSAFNVSKTLDIAGRRFHIGSVDKHKVIIVMSGLAMLNAGLTTQLLLSFFKVKGVIHYGIAGNANSSLQIGDVTVPRYWAHTGLWNWQRYGDGPNDELSLESNGDYTRKYGYLHFGNFTTPXXXXXXXXXXXVWYQPEEVFPVDGTPEVRQHAFWVPVDKRYYQIAKGLESLELEKCLNSTTCLSNTPKAVLVQRGASANVFVDNAAYRNFLYTKFKISPIDMESAAVALVCLQQRLPFIAIRALSDLAGGGTSERNEAAVFSGLASQNAVTAVIQFIKSL
B8LL97_______________MMKIFTAIHCIWMLIIVTALMVDLSSVDALLPLPKVQRIIRKINRHGPYLGIVVPNAFEMDPLLQSSSFNVSKTLDVAGRRFHIGSIHKHRVIIVMSGLGMLNSGITTQLLLSFFEVKGVVHYGIAGNANSSLHIGDVTIPRYWAHTGLWNWQRYGDGPSDELSLESNGDYTRQIGYLDFANFTTPSNQSSGNLLNNVWYQPEEVFPVNGTPEVRQHAFWVPVDEHYYQIAKSLETLKLEGCLNSTTCLSNTPKAVLVERGSSANVFVDNAAYRNFLYTKFNISPIDMESAAVALVCLEQGLPFIAIRSLSDLAGGGTSESNQAAVFAGLASQNAVTAVIQFIKDL

SNPs (tot: 102)

Position	A %	C %	G %	T %	Probability
206		66	33		0.997452
243			66	33	0.997452
438		22		77	0.999999
443	22	77			0.999999
450			30	70	1.0
474			90	10	0.90298
475		70		30	1.0
485		90		10	0.90298
518		30		70	1.0
543	70		30		1.0
558		90		10	0.90298
561	80	20			0.999996
563	80			20	0.999996
564			10	90	0.90298
565	90		10		0.90298
568		10	90		0.90298
569			80	20	0.999996
570		10		90	0.90298
571	90		10		0.90298
572		90	10		0.90298
574	10			90	0.90298
602	87		12		0.992554
603	37	12	50		1.0
604	90	10			0.90298
606		90	10		0.90298
607	90			10	0.90298
611		90	10		0.90298
612	10			90	0.90298
614	90			10	0.90298
615	80		20		0.999996
616		10	90		0.90298
618	90		10		0.90298
619	90			10	0.90298
620		90	10		0.90298
621		90	10		0.90298
624	20	80			0.999996
625		10		90	0.90298
626			10	90	0.90298
628	88	11			0.923564
629			11	88	0.923564
642		87	12		0.992554
643	87		12		0.992554
695	42		57		1.0
710		42	57		1.0
714	42		57		1.0
718	57		42		1.0
738	66		33		1.0
752	66		33		1.0
753	66		33		1.0
768			66	33	1.0
815	16		83		0.994512
816		16	83		0.994512
851		50		50	1.0
923	12		87		0.992554
966			87	12	0.992554
997		90		10	0.90298
1002	40	60			1.0
1008		40	60		1.0
1010	60		40		1.0
1013	60			40	1.0
1024		88		11	0.923564
1043		44		55	1.0
1064	50			50	1.0
1075		85		14	0.993533
1077		42		57	1.0
1085	50	50			1.0
1087	20		40	40	1.0
1089			40	60	1.0
1092		40	40	20	1.0
1094	40			60	1.0
1096		40		60	1.0
1097		40	20	40	1.0
1098		60		40	1.0
1102		40		60	1.0
1103	60	40			1.0
1105	40	60			1.0
1107	60	40			1.0
1108	40			60	1.0
1109	60	40			1.0
1110	40			60	1.0
1111	60			40	1.0
1113	40	60			1.0
1114			40	60	1.0
1115			40	60	1.0
1116			40	60	1.0
1117	40	60			1.0
1120	60			40	1.0
1122	40			60	1.0
1124	40	60			1.0
1125	40			60	1.0
1126	60			40	1.0
1127	60		40		1.0
1128	40		60		1.0
1131			57	42	1.0
1134	42			57	1.0
1136			57	42	1.0
1138	57	42			1.0
1139	42			57	1.0
1152		25	75		0.996473
1221			66	33	0.997452
1254		33		66	0.997452
1260	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain