SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16262

Length: 1564 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16262

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Vacuolar protein sorting-associated protein 26 family protein n=3 Tax=Arabidopsis RepID=D7KD27_ARALY	-	-	55%
FL-Next	tr=Vacuolar protein sorting-associated protein 26; Arabidopsis thaliana (Mouse-ear cress).	-	-	55%
Blast2go	down syndrome critical region gene 3	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	retrograde transport, endosome to Golgi	GO:0042147	Biological Process	67%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	67%
Blast2go	nucleus	GO:0005634	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Vacuolar protein sorting-associated protein 26	IPR005377	-	0.0	67%
Blast2go	Immunoglobulin E-set	IPR014756	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: F4HYH6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 146 aas, putative chimeric sequence, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 178 - 327

Fln protein: MAIELKLSRANRIYHPSEVIDGTVAITTSTSISHQGIRVNINGCVSLQLSSGTIGVIESLYSSIKPVSIINTTVDIRPPGKLNPGKTEIPFSVPLEVPVGGDPDRFYETCHGSNISIQYLITADVVRGYLHKALSTTFEFIIESGKGKLYKAPVPPESVNFTSHKILKVISCCHRYS*

Protein Length: 179

Fln nts: ATGGGGATGTGTTTGGGGGACGCTTGGAGTCGAAGTAGCAGACAAACGATGGTGGCATTTGTAGGTCTTTAACCTTTTCGCCGGATCTGTATTGCAATTTAGTATTGCATGTCGGATGTTAGGAAGCATTGGCGAGCTAATTGGTGAGAATTGGCAGTGTTCTTTGATTCCATAAACC_-_ATGGCGATAGAACTGAAGCTGAGCAGAGCGAATCGCATCTATCACCCCTCGGAGGTCATTGATGGAACAGTGGCCATCACCACTTCTACATCCATTTCTCATCAAGGAATCCGTGTTAATATTAATGGTTGTGTTAGTTTACAGCTTAGCTCAGGAACTATTGGAGTAATTGAGTCTCTCTACAGCTCCATAAAGCCAGTTTCCATTATAAACACGACTGTAGATATCAGGCCTCCAGGGAAACTAAATCCTGGCAAAACAGAGATACCATTTTCTGTGCCATTGGAGGTGCCAGTGGGTGGAGATCCTGATAGATTTTATGAGACTTGTCATGGTTCAAACATCAGCATTCAGTATTTGATAACTGCAGACGTGGTGAGGGGATATTTACATAAAGCTTTATCTACAACGTTTGAGTTCATTATTGAAAGTGGAAAAGGGAAACTTTATAAAGCACCTGTTCCCCCCGAGTCGGTAAACTTTACATCACACAAGATACTCAAAGTCATCAGCTGTTGCCATCGTTACAGTTAGGTGGATTTCGAGTTACAGTTGGAGAGAGAACTGCAGTTCAGACGACGGGCTTTCAGACAATACAGGTTGCAGATGGGGATGTTTGTCGAGGCATGTCATTGCCAATCTATATTATTCTGGCTCGACTTTTAACATGTCCTAGTCTATCAGCTGGCTCATTCTCTATTGAATTTCAACTCCAAGTCATTGTAAGTTTTGCGTCTGAACTATCAAAGCTTTATTCACAGCCTGAGTGGACCACTTCAAAGCCATGGGTGGCTTTTCAAACTATACCTCTTAGACTTGTCCGTGCAGAAAGAGAATATGACGAATGAGCACAAATTCACAATTCCAGTTTATATGAATCCTTTAGGGGATTTAGTCGCATGCTTCCAAATATTGCCGAAATTTAATTTAAAGTGAGATCAAAACATTAGTTGTCGTTGATAGCGAGCATTGTCGTTGAAATTAAAGCGCTGAAGTTAATCACCCGGGCAACAAACAATTTTACCCCATGGAAAGAATTCAAAACTATAACACGACAATTCATGGCCAAAGTTCAATCATTAGTGAGGATGAAGCAAAACATCGATATTGAGTTGCACTGTTTAGTGTTTCCAATCTCAATAATAGTGTGTAATTTTAGAATGCCCAATGCCATTTGAATTCGTAAATATTCTTGCATTTTTCACTAGGTTTCAGTTTTAGAAAGGGATATGTTCCTCTGGGATAGGGAAACTCAGTGTGGAATGTTTCACTGCGTCCGAGTCCTCTTTTTAAGAAACTTAGGGAGATTTAAGGGGATGTTTCCCAAGAAATTGGGAGTGTTTACATTTTGTTGGGGATGTTATATAGAAATGGGGACGTTTCCAT

Fln Alignment:

sp_v1.1_unigene16262___IELKLSRANRIYHPSEVIDGTVAITTSTSISHQGIRVNINGCVSLQLSSGTIGVIESLYSSIKPVSIINTTVDIRPPGKLNPGKTEIPFSVPLEVPVGGDPDRFYETCHGSNISIQYLITADVVRGYLHKALSTTFEFIIESGKGKLYKAPVPPESVNF
F4HYH6_______________VNVKLSRSNRIYRSSEPVEGKIVIKSATSISHQAIRLSVNGSVNLQVRGGSAGVIESFYGVIKPIQIVKKTIEVKSSGKIPPGTTEIPFSLNLREPGEGIVEKFYETFHGTNINIQYLLTADIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEIVIF

SNPs (tot: 4)

Position	A %	G %	T %	Probability
98	12		87	0.992554
100		12	87	0.992554
101	87	12		0.992554
549	80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain