SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16261

Length: 2181 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16261
CGTCGTGACCTTGGCTGTCACTCATTTCGCCATGTCCTTGGCATGTTGTGTGTGTTCCCTTCTTGGGATGCAAGAGGTGCAAGGTATAAAAGTTTTACATGATATTTTGATGTCTCTTTGACTTAATGGGTGTTCAGGTTGGTTCTTGGTAAGGGAGCACTTGGAATGCCCTTTAAAGTGGGAGGGCACTACCTAGTTGAGCATGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATGAACTAATTCAGACTGTGAAACTGCGGATGGCTCATTAAATCAGTTATAGTTTTTTTGATGGTACCATACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCACCAAGTCCCGACTCTTTGGAAGGGATGCATTTTTTAGATAAAAGGCCGGCGCGGGCTTGCCCGCTTCTCCGGTGAATCATGATAACTCGACGGATCGCACAGCCCTTGTGCTGGCGATGCTTCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGAGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACATGGGGAGGTAGTGACAATAAATAACAATACTGGGCTCATCGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGTCGTAAAGGTCGGTCCGCCTACTCGGTGTGCACCTGCCTTTCCGTCCCTTTTGTCGGCGGCGTGCTCCTGGCCTTAATTGGCTGGGTCGCGGTTCCGGCGCTGTTACTTTGAAAAAATTAGAGTGCTCAAAGCAAGCTTATGCTCTGAATACATTAGCATGGAATAACGTGATAGGAGTCTGGTCCTATTGTGTTGGCCTTCGGGACCGGAGTAATGATTAATAGGGACTGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGGACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTCTAAGGACTCCGCCAGCACCTTCTGAGAAATCAGAGTGTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGAGCTTTTCTTATTGGGGAGCGAGAGGTGAATTCGTTCACAAATCATCGCCTGGTCTGCGGTTGGACTCTTGCGATCACCAAATTGTCAGCTACGGATCTTCGTTCTCACTCCTCTGTTGATCCAAAAGCTGCGGAGTCCGGCAATCTGCAGAGAAAAATTTGAAGAATTTGAGTTTTTGAGCCGGGCAATCTGCAGAGAAAAATTCGAAGAATTTGAGTGCCAGCATCGAATCCCCGGACTGAATGGCGACCACTGGCACCAATAACATGCAGGCTAAGCTGGTGCTTCTTGGTGATATGGGTACTGGAAAATCGAGCCTTGTTTTGCGATTTGTCAAAGGCCAATTTTTGGATTATCAGGAGTCGACAATTGGAGCAGCATTTTTCTCACAGACACTAGCAGTGAATGAGGTGACTGTAAAATTTGAGATATGGGACACTGCAGGACAGGAAAGATATCATAGCTTGGCGCCCATGTATTATCGTGGTGCTGCAGCAGCTATAATTGTTTATGACATAACAAATTTGGATTCTTTTGTCCGAGCAAAGAATTGGGTGCTGGAGCTCCAAAAACAAGGCAACCCAAATTTGGTTATGGCCCTTGCTGGAAATAAGGCTGATATGGCAGCAAAGAGGAAGGTCGAACCAGAGGAAGCTGAAACATATGCAAAGGAAAATGGTCTATTTTTCATGGAAACCTCAGCAAAGACGGCACAGAATGTCAATGAACTGTTCTATGAAATTGCGCGAAGATTACCTAAAGCCCGACCAGTGCAGCAGCCTGCAGGCATGGTTCTCACAGATAGACCTGCAGAGAGTGCTAAAACTTACTCTTGCTGC

Ace file of the UniGene sp_v1.1_unigene16261

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SSU rRNA; Pinus luchuensis	-	-	99%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	gtp binding protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	88%
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	88%
Blast2go	GTP binding	GO:0005525	Molecular Function	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTPase superfamily	IPR001806	-	88%
Blast2go	Ran GTPase	IPR002041	-	88%
Blast2go	Ras small GTPase, Ras type	IPR003577	-	88%
Blast2go	Small GTPase superfamily, Rho type	IPR003578	-	88%
Blast2go	Small GTPase superfamily, Rab type	IPR003579	-	88%
Blast2go	Small GTP-binding protein domain	IPR005225	-	88%
Blast2go	Ras	IPR013753	-	88%
Blast2go	Small GTPase	IPR020851	-	88%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKR1

Fln msg: STOP codon was not found. Distance to subject end: 1 aas,

Fln protein: MATTGTNNMQAKLVLLGDMGTGKSSLVLRFVKGQFLDYQESTIGAAFFSQTLAVNEVTVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNLDSFVRAKNWVLELQKQGNPNLVMALAGNKADMAAKRKVEPEEAETYAKENGLFFMETSAKTAQNVNELFYEIARRLPKARPVQQPAGMVLTDRPAESAKTYSCC

Protein Length: 200

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCGCCATGTCCTTGGCATGTTGTGTGTGTTCCCTTCTTGGGATGCAAGAGGTGCAAGGTATAAAAGTTTTACATGATATTTTGATGTCTCTTTGACTTAATGGGTGTTCAGGTTGGTTCTTGGTAAGGGAGCACTTGGAATGCCCTTTAAAGTGGGAGGGCACTACCTAGTTGAGCATGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATGAACTAATTCAGACTGTGAAACTGCGGATGGCTCATTAAATCAGTTATAGTTTTTTTGATGGTACCATACTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCACCAAGTCCCGACTCTTTGGAAGGGATGCATTTTTTAGATAAAAGGCCGGCGCGGGCTTGCCCGCTTCTCCGGTGAATCATGATAACTCGACGGATCGCACAGCCCTTGTGCTGGCGATGCTTCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGAGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACATGGGGAGGTAGTGACAATAAATAACAATACTGGGCTCATCGAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGTCGTAAAGGTCGGTCCGCCTACTCGGTGTGCACCTGCCTTTCCGTCCCTTTTGTCGGCGGCGTGCTCCTGGCCTTAATTGGCTGGGTCGCGGTTCCGGCGCTGTTACTTTGAAAAAATTAGAGTGCTCAAAGCAAGCTTATGCTCTGAATACATTAGCATGGAATAACGTGATAGGAGTCTGGTCCTATTGTGTTGGCCTTCGGGACCGGAGTAATGATTAATAGGGACTGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGGACCACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTCTAAGGACTCCGCCAGCACCTTCTGAGAAATCAGAGTGTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGAGCTTTTCTTATTGGGGAGCGAGAGGTGAATTCGTTCACAAATCATCGCCTGGTCTGCGGTTGGACTCTTGCGATCACCAAATTGTCAGCTACGGATCTTCGTTCTCACTCCTCTGTTGATCCAAAAGCTGCGGAGTCCGGCAATCTGCAGAGAAAAATTTGAAGAATTTGAGTTTTTGAGCCGGGCAATCTGCAGAGAAAAATTCGAAGAATTTGAGTGCCAGCATCGAATCCCCGGACTGA_-_ATGGCGACCACTGGCACCAATAACATGCAGGCTAAGCTGGTGCTTCTTGGTGATATGGGTACTGGAAAATCGAGCCTTGTTTTGCGATTTGTCAAAGGCCAATTTTTGGATTATCAGGAGTCGACAATTGGAGCAGCATTTTTCTCACAGACACTAGCAGTGAATGAGGTGACTGTAAAATTTGAGATATGGGACACTGCAGGACAGGAAAGATATCATAGCTTGGCGCCCATGTATTATCGTGGTGCTGCAGCAGCTATAATTGTTTATGACATAACAAATTTGGATTCTTTTGTCCGAGCAAAGAATTGGGTGCTGGAGCTCCAAAAACAAGGCAACCCAAATTTGGTTATGGCCCTTGCTGGAAATAAGGCTGATATGGCAGCAAAGAGGAAGGTCGAACCAGAGGAAGCTGAAACATATGCAAAGGAAAATGGTCTATTTTTCATGGAAACCTCAGCAAAGACGGCACAGAATGTCAATGAACTGTTCTATGAAATTGCGCGAAGATTACCTAAAGCCCGACCAGTGCAGCAGCCTGCAGGCATGGTTCTCACAGATAGACCTGCAGAGAGTGCTAAAACTTACTCTTGCTGC

Fln Alignment:

sp_v1.1_unigene16261___MATTGTNNMQAKLVLLGDMGTGKSSLVLRFVKGQFLDYQESTIGAAFFSQTLAVNEVTVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNLDSFVRAKNWVLELQKQGNPNLVMALAGNKADMAAKRKVEPEEAETYAKENGLFFMETSAKTAQNVNELFYEIARRLPKARPVQQPAGMVLTDRPAESAKTYSCC
A9NKR1_______________MATTGTNNMQAKLVLLGDMGTGKSSLVLRFVKGQFLDYQESTIGAAFFSQTLAVNEVTVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNSDSFVRAKNWVLELQKQGNPNLVMALAGNKADVAAKRKVEAEEAETYAKENGLFFMETSAKTAQNVNELFYEIARRLPKARPVQQPAGMVLTDRPAERARTYSCC

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
313			33	66	0.997452
319	75			25	0.996473
331	25		75		0.996473
337		75		25	0.996473
375	25		75		0.996473
511		66		33	0.997452
528	33		66		0.997452
599		33		66	0.997452
614	66			33	0.997452
647		75		25	0.996473
648	75		25		0.996473
649			25	75	0.996473
1184	9			90	0.999842
1185		54	36	9	1.0
1187	61		38		1.0
1188	80		3	15	1.0
1190	84		15		1.0
1191		84	15		1.0
1277		10		90	0.90298
1278		10	90		0.90298
1279	90	10			0.90298
1302			87	12	0.992554
1337	90	10			0.90298
1338	90	10			0.90298
1347		11		88	0.923564
1348	11			88	0.923564
1351	12			87	0.992554
1414		42	57		1.0
1457	14		85		0.993533
1590	71		28		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain