SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16258

Length: 1231 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16258

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L7a; K02936 large subunit ribosomal protein L7Ae	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	60s ribosomal protein l7a	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	94%

Source	GOs	Term	Type	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	94%
Blast2go	translation	GO:0006412	Biological Process	94%
Blast2go	binding	GO:0005488	Molecular Function	94%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	94%
Blast2go	ribosome	GO:0005840	Cellular Component	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7T8

Fln msg:

Fln protein: MAPKRGVKVPAAAKKKVPKVVNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRVLKQRLKVPPALNQFTKTLDKNLAANLFKMLLKYRPEDKAAKKERLLKKAQAEAEGKTVEVKKPIVVKYGINHVTYLIEQSKAQLVVIAHDVDPIELIVWLPALCRKMNIPYAIVKGKARLGAIVHKKTATALCLTSVKNEDKMEFSKIVEAVKANFNDKFDEYRRQWGGGIMGTKSQAKTKAKEKLVAKEAAQRLT*

Protein Length: 260

Fln nts: CGTCGTGACCTTGGTGTCACTGAATTTGTTATTGACGTGCGCGTGGAAGGAGGTGCCGGGTCAGTTAGCAGAGTGAGGCAGAGAGGCGGAGCATATCGATTCCAGCA_-_ATGGCTCCGAAGAGAGGGGTTAAGGTTCCAGCCGCTGCGAAGAAGAAGGTCCCGAAGGTTGTTAATCCATTGTTTGAAAAGCGGCCCAAGCAGTTTGGGATTGGGGGAGCTCTGCCGCCAAAGAAGGATTTGCACAGATTCGTGAAATGGCCGAAGGTCGTACGCATCCAGAGGCAGCGGAGGGTATTGAAGCAGCGTTTGAAGGTTCCTCCGGCCTTAAACCAGTTCACCAAGACGCTTGACAAGAATCTCGCTGCCAACCTTTTCAAGATGCTTCTAAAATATAGGCCGGAAGATAAAGCTGCAAAGAAGGAAAGGCTTCTGAAAAAAGCTCAGGCTGAGGCAGAAGGGAAGACCGTTGAAGTGAAGAAGCCTATTGTTGTGAAATATGGAATTAATCATGTAACTTACCTAATTGAGCAGAGTAAAGCTCAATTGGTAGTCATTGCACATGATGTTGATCCAATTGAGTTGATTGTGTGGCTTCCTGCACTTTGTAGAAAAATGAACATCCCTTATGCAATTGTCAAGGGGAAAGCACGTCTTGGAGCGATCGTGCACAAAAAAACAGCAACAGCCTTGTGTTTGACTTCTGTAAAGAACGAGGACAAGATGGAATTTAGCAAGATTGTCGAGGCAGTAAAGGCTAACTTCAATGACAAATTTGATGAGTATCGGCGACAATGGGGAGGTGGCATTATGGGAACCAAATCGCAGGCAAAAACAAAGGCCAAGGAAAAACTTGTGGCCAAGGAAGCAGCACAGAGGCTCACTTAA___GAATAATTCCTCGGAATATTTTTCCCATTTTCAAATTTTTATTGGATTGTCTTTTGCAGTTTGTTGTAATTTGATTTACAGGTATAGTAACATATCAAAGTTTTGTACTAAGGAATTCTCTAAGCCAATTTTAACTCAAGGCTCAGAAAACATGTCAATTTTGCAACTGGATAAATTGTTGAGTAAACAATATTTCATACACATTCATTGGCCTTACGCATTCTCTACAACATTTTGTATGCTGTGATGATGATATCTTCATTTTGTCCTTCTGTATGTTAGTGTTGTTGATATTTAATGCTATATACTTTTAAGCATGTACGGTGTTTACATGTACATGTAGCTAT

Fln Alignment:

sp_v1.1_unigene16258___MAPKRGXXXXXXXXXXXXXXXNPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALNQFTKTLDKNLAANLFKMLLKYRPXXXXXXXXXXXXXXXXXXXGKTVEVKKPIVVKYGINHVTYLIEQSKAQLVVIAHDVDPIELIVWLPALCRKMNIPYAIVKGKARLGAIVHKKTATALCLTSVKNEDKMEFSKIVEAVKANFNDKFDEYRRQWGGGIMGTKSQXXXXXXXXXXXXXXXQRLT
D5A7T8_______________MAPKRGVKAPVAAKKKVPKVVNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRVLKQRLKVPPALNQFTKTLDKNLAANLFKMLLKYRPEDKAAKKERLLKKAQAEAEGKTVEVKKPIVVKYGINHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMNIPYAIVKGKARLGAIVHKKTATALCLTSVKNEDKMEFSKIVEAIKGNFNDKFDEYRRQWGGGIMGTKSQAKTKAKEKVLAKEAAQRLT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
736	97		2		0.998699
908			12	87	0.995041
928	14			71	0.988635
930	10			90	0.991528
1113	10	90			0.90298
1234		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain