SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16253

Length: 1447 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16253

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	50S ribosomal protein L7/L12, putative n=1 Tax=Ricinus communis RepID=B9RB19_RICCO	-	-	7.0e-35	60%
FL-Next	sp=50S ribosomal protein L12, chloroplastic; Spinacia oleracea (Spinach).	-	-	0.0	32%
Blast2go	ribosomal protein l12 family protein	-	-	6.73763e-36	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	6.73763e-36	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	translation	GO:0006412	Biological Process	6.73763e-36	72%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	6.73763e-36	72%
Blast2go	large ribosomal subunit	GO:0015934	Cellular Component	6.73763e-36	72%
Blast2go	mitochondrion	GO:0005739	Cellular Component	6.73763e-36	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P02398

Fln msg: your sequence is longer than subject: 260 - 189

Fln protein: MKAGSCRFETSEASILVVFGNIRLPEATVLLLIYSKAGEFIPSVYFIFKNMKLPFWYRLGSALSRKNYPTLASRHEAADKFQRSLLYITFGPQTDTPRYFSMETKPRKLKLPSHYDPYGPRPPPSDKILKLAEAIASLSPEERKQIGPCLRDKLRAPRIEMLSAEAAAAIPQAGPASGAAKAEEKKAEKTAFDIKLEKFDSAAKIKVIKEVRAFTDLGLKEAKELVEKAPVILKQGVTKEEANAIIEKIKAAGGVAVME*

Protein Length: 261

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGGCAAGCATAGCGTCTAGCTTGTCTGTCACGGTAATAATCCCTTTCTAAATTTTTCATACCCTCGTCGTGAATCTAATCATATAAATCATTTTCTTCCCCATCCACTGGTTGACGATTTGATTTGGAAGCAATAATTTTGTAGTAAAACTGATGGTTGTGTTGCGTAATAACAGTCCCATGAAGGAGGGAGGCATCGTATCAGTCGCCGCTGCGCCTTCGAAAATCTCAAACAGGTGAAAATTCGAGGACAGAGACCATCTGTTGGTATTACATAATTCTAAGTCAAAGACCATCTGTTAGGGTTCAGGGTTTT_-_ATGAAGGCGGGTAGTTGCAGGTTCGAAACCTCGGAGGCATCTATTCTGGTCGTATTTGGCAATATCCGTCTTCCTGAAGCAACTGTCCTCCTCTTGATATATTCAAAAGCTGGTGAGTTCATTCCCAGCGTTTACTTCATCTTTAAAAACATGAAACTGCCATTCTGGTACAGATTAGGGTCTGCCTTATCCCGTAAAAACTATCCCACTCTCGCTTCCAGACATGAAGCCGCAGATAAATTCCAGAGATCACTTTTGTACATTACCTTTGGACCCCAAACTGACACTCCACGCTATTTTTCCATGGAAACCAAACCCCGAAAACTGAAATTGCCATCTCACTATGATCCATACGGGCCGAGGCCTCCTCCCTCCGACAAAATCCTCAAGCTCGCTGAAGCCATTGCCAGCCTCTCCCCGGAAGAGCGAAAACAGATCGGCCCCTGTTTGAGGGATAAGTTGAGGGCGCCCCGCATTGAGATGCTGTCAGCGGAGGCTGCCGCAGCGATCCCTCAGGCGGGTCCGGCTTCTGGTGCAGCGAAAGCCGAGGAAAAGAAGGCCGAGAAGACCGCATTTGATATCAAGTTGGAGAAGTTCGACAGCGCGGCGAAGATCAAGGTCATCAAGGAAGTGAGGGCATTCACCGATTTGGGGCTGAAGGAGGCTAAGGAGCTCGTGGAGAAGGCGCCTGTTATTCTGAAGCAGGGTGTCACCAAGGAAGAGGCGAATGCGATCATAGAAAAGATCAAGGCTGCCGGAGGAGTCGCTGTCATGGAATGA___GTTGCATCATTATCATGGGCAATCACAAATAGGGCAACGCTTATGGGTTCCTGTGTATTCTTTGTGGGTACCTTTCCTTGTCGTTGATATCATTGCTATGCTTTCTTATTTGCAAGTTTACTAAAAACATCAAACCTGCATACGACTTGTCAAAGATGAATGGTTTTGGTATATGTTTTGAAATGTTATTTGAGCACAGTACATTATGTGGAACATTCAGAGTTCAAATCTTAAAGGCACTTAAATTGCAGCAATCAAATTTCTTTTTAGATATATTCTGCTTCGATGCGGATAAGGTCACTTGTTCCATTCTCACGTACTCCTTGG

Fln Alignment:

sp_v1.1_unigene16253___SALSRKNYPTLASRHEAADKFQRSLLYITFGPQTDTPRYFSMETKPRKLKLPSHYDPYGPRPPPSDKILKLAEAIASLSPEERKQIGPCLRDKLRAPRIEMLXXXXXXXXXXXXXXXXXXXXXXXXXXXTAFDIKLEKFDSAAKIKVIKEVRAFTDLGLKEAKELVEKAPVILKQGVT
P02398_______________TTMATLNLPSLTS-HPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLR------PIAAVEAP-EKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPADAAPAVEEK------TEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVS

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
81		33		66	0.997452
82			33	66	0.997452
85	66		33		0.997452
91		66		33	0.997452
101		33	66		0.997452
103	66	33			0.997452
105		33	66		1.0
106	33			66	0.997452
116	83	16			0.994512
117	50	33	16		1.0
118	50			50	1.0
121	83		16		0.994512
123			16	50	1.0
124	16			83	0.994512
125		16		83	0.994512
129		83	16		0.994512
130		83	16		0.994512
132		83		16	0.994512
133	83		16		0.994512
141		16	83		0.994512
142	16			83	0.994512
143			16	83	0.994512
208		83		16	0.994512
1220		37		62	1.0
1226	37		62		1.0
1335		42		57	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain