SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16242

Length: 1076 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16242

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to peroxisomal targeting signal 1 receptor; PTS1 receptor; Pex5p; K13342 peroxin-5	-	-	54%
FL-Next	sp=Peroxisome biogenesis protein 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	peroxisomal targeting signal 1 receptor	-	-	60%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to peroxisome	GO:0006625	Biological Process	60%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	60%
Blast2go	protein binding	GO:0005515	Molecular Function	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9FMA3

Fln msg: Distance to subject end: 452 aas, your sequence is shorter than subject: 303 - 728

Fln protein: MALRDLVTGGAACAVPGAPSSSSNPLGALADSIFGSSSKTQERLNELPALAGSGPSGTSEIRTIGSLTSLPGSEYEQDHFQRSNIQGSEFLHGFKPVDHARYEGAWHESTGIPHLTSVHYQTGEGHDYYPEFEQIYDQGIANIQAQPDLEGAPQRVLSGFLRSFVDSSRAEIPFRPAQLPVLGLSEGDKRCIRDRSSIMARHFFADKSEDYINAQVNALLHSLDIENDLRAWTPTGGRFSELEEYWNESQGAGYNSMVRNNFDTSHPSDKWVTEYSQRSNISGSWAEEFEQDHGVEAWAGQFN

Protein Length: 304

Fln nts: ATGGGGGATGAAAGTGTCATAGCTATAATAAAATAGAACAATAGGATTGATAGATGGATGCAGTAGGATTGATAGAGCGAGTGAATCGTGCCTCATCAATATATATTTCATCTGCTACGAGGCCGAGGTGGATACGCATCGCCTATACGAACAGCAATTCACAGA_-_ATGGCGCTGAGGGATTTGGTGACCGGAGGAGCAGCATGTGCCGTTCCTGGAGCCCCTTCGTCCTCTTCTAATCCTCTTGGGGCTCTCGCAGACTCTATCTTCGGATCCTCCTCGAAAACTCAGGAAAGATTAAATGAGCTTCCCGCATTAGCTGGATCAGGACCAAGTGGTACTTCAGAAATTAGAACCATTGGATCTTTGACTTCCCTTCCAGGATCAGAATATGAACAGGATCACTTTCAACGGTCGAATATTCAGGGTTCAGAGTTTTTGCATGGCTTCAAGCCTGTTGACCATGCTAGATATGAAGGTGCTTGGCATGAGTCCACAGGGATCCCACATCTCACTTCTGTACACTATCAAACTGGAGAAGGCCATGATTATTATCCTGAGTTTGAACAAATTTATGACCAAGGCATTGCAAACATTCAAGCCCAACCTGACCTTGAGGGAGCTCCACAAAGGGTACTATCAGGCTTCCTCCGGTCTTTTGTGGACAGCAGCAGAGCAGAAATTCCTTTCCGACCAGCACAGCTTCCAGTTCTAGGTTTGTCAGAAGGTGACAAACGATGTATACGTGACCGTAGCAGCATTATGGCACGCCACTTTTTTGCTGATAAAAGTGAAGATTATATTAATGCACAGGTAAATGCACTTCTGCATTCTTTGGATATTGAAAATGATCTCAGGGCTTGGACTCCTACCGGTGGGAGATTCTCAGAGCTGGAAGAGTACTGGAATGAATCCCAGGGTGCTGGTTATAATTCCATGGTTAGAAACAATTTTGATACCTCTCATCCTTCTGACAAATGGGTCACAGAATATAGTCAAAGAAGCAATATATCTGGATCCTGGGCTGAAGAGTTTGAGCAAGATCATGGTGTTGAAGCTTGGGCAGGCCAGTTCAATCA

Fln Alignment:

sp_v1.1_unigene16242___MALRDLVTGGAACAVPGAPSSSSNPLGALADSIFGSSSKTQERLNELPALAGSGP-----SGTSEIRTIGSLTSLPGSEYEQDHFQRSNIQGSEFLHGFKPVDHARYEGAWHESTGIPHLTSVHYQTGEGHDYYPEFEQIYDQGIANIQAQPDLEGAPQRVLSGFLRSFVDSSRAEIPFRPAQLPVLGLSEGDKRCIRDRSSIMARHFFADKSEDYINAQVNALLHSLDIENDLRAWTPTGGRFSELEEYWNESQGAGYNSMVRNNFDTSHPSDKWVTEYSQRSNISG---SWAEEFEQDHGVEAWAGQF
Q9FMA3_______________MAMRDLVNGGAACAVPGS-SSSSNPLGALTNALLGSSSKTQERLKEIPNANRSGPRPQFYSEDQQIR------SLPGSELDQPLLQ-PGAQGSEFFRGFRSVDQNGLGAAWDEVQ----------QGGPMPPMGPMFEPV----------QPTFEGPPQRVLSNFLHSFVESSRGGIPFRPAPVPVLGLSQSDKQCIRDRSSIMARHFFADRGEEFINSQVNALLSSLDIDDGIQARGHVPGRFRELDDYWNESQ-----AVVKPNL---HPADNWAAEFNQHGMDHGGPDSWVQSFEQQHGVNGWATEF

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
379		16		83	0.994512
475		33		66	0.997452
523	80		20		0.995493
670		75		25	0.996473
709		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain