SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16222

Length: 1690 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene16222

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	spliceosome associated protein, putative; K12825 splicing factor 3A subunit 1	-	-	65%
FL-Next	sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA processing	GO:0006396	Biological Process	0.0	73%
Blast2go	RNA binding	GO:0003723	Molecular Function	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin	IPR000626	-	0.0	73%
Blast2go	Ubiquitin supergroup	IPR019955	-	0.0	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8RXF1

Fln msg: Separated hits, possible frame ERROR between 578 and 1022, your sequence is shorter than subject: 451 - 785

Fln protein: EEEVHLVEESLKTSTGDENAAKAQAPPPPIEETEAPIRIVKNWKRPEERLPAEKDPTKFVVSPITGELIPINEMAEHMRISLIDPKYKEQKERMMAKLRETTLAPDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKKRSQSKSFGMVILEALVALQNQAMSQNAGDEQMDLNNNDGRTRPGLHPLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRQNIDDIQLIPEDQFLAQHPGSVRISVSVPNLEEGNLNGQMLEVTIQSLSETISSLKEKIAAEVALPANKQKLSGRAGFLKDNLSLAYYNIGPGETLTLALRERGGRKR*

Protein Length: 452

Fln nts: ATGAAGAAGAGGTCCATCTGGTCGAAGAGAGCTTGAAGACATCGACTGGGGATGAAAATGCTGCCAAAGCACAAGCGCCCCCTCCGCCAATCGAGGAAACAGAGGCACCTATAAGGATTGTAAAGAACTGGAAGAGACCAGAAGAAAGGCTCCCAGCTGAAAAGGATCCAACCAAGTTTGTTGTCTCTCCGATCACTGGGGAACTGATTCCCATTAACGAGATGGCTGAACATATGCGGATTTCACTTATAGATCCAAAATATAAAGAACAGAAGGAAAGAATGATGGCTAAGCTTCGGGAGACAACCCTTGCCCCCGATGATGAAATCTCTCGAAACATCGTGGGACTTGCTCGAACTCGGCCCGATATTTTTGGTACAACAGAAGAGGAAGTCTCTAATGCGGTTAAGGCTGAAATAGAAAAGAAAAAGAGGAGCCAAAGCAAGTCATTTGGGATGGTCATACTGGAAGCATTGGTCGCACTGCAAAACCAGGCCATGTCCCAGAATGCTGGTGATGAACAGATGGATTTAAATAATAATGATGGGAGGACTCGTCCTGGGCTGCaCCcCCTCCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAGAGGCAAAACATAGATGATATCCAACTCATTCCAGAAGACCAATTCTTGGCACAACATCCGGGATCTGTTCGCATATCTGTTTCTGTCCCCAATCTCGAAGAAGGAAATCTGAACGGGCAGATGCTGGAAGTTACAATACAGTCTCTATCTGAAACTATATCCAGTCTTAAGGAGAAGATTGCAGCAGAGGTTGCCTTACCTGCAAACAAACAAAAACTTAGTGGACGGGCAGGTTTTCTCAAGGACAACCTATCACTTGCATATTATAACATAGGGCCTGGAGAAACATTGACGTTGGCCCTGAGAGAACGTGGTGGTAGAAAACGATAGGCATGTAATTGACCACTGACATGATGTCAGAATAAAATTGATGATCGTGTCCGTAAGTTCTTTCGTTTATATTTATAATGTCCTGTAGGAAGCTTCATCTCTGGGCTTATTGAAAGCTTATGTTCTTTTTGACAAATTATGGAGAATATCTGCGAAGGTATCTTTGGTGAATGTCTTGTAATCATATCCCTTTACCTTTATAATGTCGTATAGAAAGCTTTGATTCTCTGGGCTCATTGAAGGCGTACTTGCTTTTTGATAAATTGCGGAGAATATTTGCTAAGATTTGTTTGGTGAACGTGTTGTAACTTGTAATCATATTCTTTTTTGGATGTC

Fln Alignment:

sp_v1.1_unigene16222___EEEVHLVEESLKTSTGDENAAKXXXXXXXXXXXXXXXXXVKNWKRPEERLPAEKDPTKFVVSPITGELIPINEMAEHMRISLIDPKYKEQKERMMAKLRETTLAPDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKKRSQSKSFGMVILE----ALVALQNQAMSQNA-GDEQMDLNNNDGRTRPGLHPLPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRQNIDDIQLIPEDQFLAQHPGSVRISVSVPNLEEGNLNGQMLEVTIQSLSETISSLKEKIAAEVALPANKQKLSGRAGFLKDNLSLAYYNIGPGETLTLALRERGGRKR
Q8RXF1_______________EEEVKLVAEGMRAANLEENVK-----IENVHDEEAPMRIVKNWKRPEDRIPTERDPTKVVISPITGELIPINEMSEHMRISLIDPKFKEQKDRMFAKIRETTLAQDDEIAKNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQPK---QVIWDGHTGSIGRTANQALSQNANGEEQGDGVYGDPNSFPGPAALPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRQKFDESALVPEDQFLAQHPGPATIRVSKPNENDG----QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERGGRKR

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
73	88		11		0.923564
74	88			11	0.923564
76		88		11	0.923564
78	11	88			0.923564
81		88		11	0.923564
82		88		11	0.923564
83			11	88	0.923564
84		88	11		0.923564
87		88		11	0.923564
90	88	11			0.923564
174	81			18	1.0
175	81	12		6	0.999943
178		6	12	81	0.999943
179	12			87	0.999964
180		12	87		0.999964
184			12	87	0.999964
187		88	11		0.999937
190	11	88			0.999937
191		11	88		0.999937
404	11		88		0.923564
754	60			40	1.0
758		80		20	0.995493
856		20	80		0.995493
860		80		20	0.995493
867	20	80			0.995493
880		80		20	0.995493
891	14	85			0.993533
896		57		42	1.0
908	42		57		1.0
916	85		14		0.993533
955	50			50	1.0
988	80			20	0.995493
994		80	20		0.995493
995		80		20	0.995493
999	80			20	0.995493
1002		20	80		0.995493
1007		20		80	0.995493
1049		60	40		1.0
1065		80		20	0.995493
1094	83			16	0.994512
1095		83	16		0.994512
1096	83		16		0.994512
1097			16	83	0.994512
1098		50		50	1.0
1140	33		50		1.0
1151		16	83		0.994512
1204			66	33	1.0
1442			71	28	1.0
1449		14		85	0.993533
1466		40		40	1.0

SSRs (tot: 4)

Start position	End position	Sequence	Length
607	619	TCC TCC TCC TCC T	13
897	910	CAC CAC CAC CAC CA	14
944	956	CCT CCT CCT CCT C	13
971	982	CCA CCA CCA CCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain