SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene16209

Length: 2163 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene16209
CGTCGTGACCTTGGCTGTCACTCAAACATTCCAATTTTCATATTTCCCCTGAACATTTTTTTTCTTCTGCTTGGGATCGGTTCAGAAGTGTATTGGGTACTACTGAGTATCGCCAAGTGTCAATCTTGAGGTGTTTTGGGGAATTGGGTTCGATCCAGTAATGGCACCTATGGAAGATTTTAGTGAAAAATCGATGGTCCACAGCAGATTAGCAGTACTTTCTGGTCATTTATCGGTTCCTCCGGTGGGTTCTTCCTTAGGTATTGAGACTTCTACAGTGTCTGTAAAGCTCTCGGGGGATCTGAGAGGTTCTCTGACTGTTATTGATAACCGAACGGGGAAGAAAATTGAGGTCGAAGTCAGTGAGGGAGGAACAGTCCGGGCCACTGATTTCAAAAAGTTAACTGTAGGTGGGGATGACAAAGGACTGAAGATTTATGATCCAGGATACTTGAACACTGCTCCTGTCCGTTCATCAATATCTTACATAGATGGAGATGAAGGAATCCTGCGATATAGAGGTTATCCAATTGAGGAGTTAGCTGAGAAGAGCACTTACCTTGAGGTGGCTTACCTCTTAATGTATGGAAATCTTCCTTCTCAGTCCCAGTTAGCAGATTGGGAATTCAATATTTCCCAACATTCAGCAGCGCCCGAGGGAGTATTGGATATCATACAAGCAATGCCTCATGATGCTCATCCAATGGGTATGCTTGTTAGTGCAATAAGTGCACTTTCTACATTTCATCCAGATGCCAATCCAGCATTAAGGGGACAAGATCTTTACAATTCAAAGTCCATTCGAGACAAGCAGATTTCACGTGTCTTGGGAAAGGTACCAACTATAGCAGCGGCTGCATACTTGAGAATGGCGGGGAGACCACCTGTCTTACCTTCCAGTAACCTTTCTTATTCAGAGAATTTTCTATATATGTTGGATTCACTGGGTGACAGATCATATAAACCCAATCCTCGACTAGCAAGAGCCATTGATGTACTTTTCATCTTGCATGCGGAGCATGAAATGAACTGTTCAACAGCTGCTGCACGTCACCTTGCTTCCAGTGGTGTTGATGTCTATACTGCTCTTGCTGGGGCGACTGGTGCGTTGTATGGTCCTTTGCATGGAGGGGCAAATGAGGCGGTTCTCAGAATGCTTAATGAAATTGGCACAATTGATAACATTCCAGAGTTCATTGAGGGTGTGAAAAACAGGAAAAGAAAAATGTCTGGTTTCGGTCATCGAGTATACAAGAATTATGATCCACGTGCTAAGGTTATTCGCAATTTAGCAGAAGAAGTGTTCTCTATTGTTGGACGTGATCCTTTGATTGAGGTGGCTGTGGCATTAGAGAGGGCTGCACTTTCAGATGAGTACTTTATTAAGAGGAAGCTCTACCCAAATGTTGATTTTTATTCAGGCTTAATTTACAGGGCACTGGGTTTCCCGACTGAATTCTTCCCAGTCCTATTTGCCATTCCACGTATGGCTGGTTATCTCGCTCATTGGAAGGAGTCACTTGATGATCCAGATACAAAAATCATGAGGCCACAACAGTGGTACACTGGGGTGTGGCTTCGGCACTATACACCTTTGAACAAGAGGGAAGTTTCAGAGGAGGCTGACAAGCTTGGTCAAGTAGCTGTTTCTAATGCAACAAGAAGACGCCGTGCTGGACTGATTGCATGATTATGATTGGTGTTGGTGATGAAATTTGTTGGTAGCTTCTTGTTCCACAATTATTCATTGTGGAAGATCATGAAAATTTCATTAAGCAGCATGGTGTTAATTTATCAGTTTTTACTTGAAAAATGATCAATGCCTACAGATCCTTTTTTCCAGCTCGATATAGAGGTCTGGTTCTTGCATCATTTTCTTTGTGACTATCATATAGTTCATCTACACACTATCAAACAAAGAGTTCGAGCAGTTGAAATTTATGAGACCATGCACTTGCAATCTAGTTTGCCAGTGTGAAACTCTAATAATTTTTCTGGCATTATCATTTATGTAAGAAAGAGCCAACATTATGCTTTTAAACGTGTATACAATGAGTTACCCTTGGCATGTGGTAATTGTGGTCTCTTCAGCGTTGAGTATACGGTTAGCTCTGTACAGTGCTAGCTGTGTGGTATCCTAATCCAACTCTAATAAAACTAGTA

Ace file of the UniGene sp_v1.1_unigene16209

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Citrate synthase n=1 Tax=Picea sitchensis RepID=D5AAX0_PICSI	-	-	94%
FL-Next	sp=Citrate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Citrate (Si)-synthase.	EC:2.3.3.1	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	89%
Blast2go	Glyoxylate and dicarboxylate metabolism	00630	89%
Blast2go	Biosynthesis of phenylpropanoids	01061	89%
Blast2go	Biosynthesis of terpenoids and steroids	01062	89%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	89%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	89%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	89%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	89%
Blast2go	Biosynthesis of plant hormones	01070	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	89%
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	89%
Blast2go	glyoxylate cycle	GO:0006097	Biological Process	89%
Blast2go	citrate (Si)-synthase activity	GO:0004108	Molecular Function	89%
Blast2go	glyoxysome	GO:0009514	Cellular Component	89%
Blast2go	plastid	GO:0009536	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Citrate synthase-like	IPR002020	-	89%
Blast2go	Citrate synthase-like, core	IPR016141	-	89%
Blast2go	Citrate synthase-like, large alpha subdomain	IPR016142	-	89%
Blast2go	Citrate synthase-like, small alpha subdomain	IPR016143	-	89%
Blast2go	Citrate synthase active site	IPR019810	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAX0

Fln msg:

Fln protein: MAPMEDFSEKSMVHSRLAVLSGHLSVPPVGSSLGIETSTVSVKLSGDLRGSLTVIDNRTGKKIEVEVSEGGTVRATDFKKLTVGGDDKGLKIYDPGYLNTAPVRSSISYIDGDEGILRYRGYPIEELAEKSTYLEVAYLLMYGNLPSQSQLADWEFNISQHSAAPEGVLDIIQAMPHDAHPMGMLVSAISALSTFHPDANPALRGQDLYNSKSIRDKQISRVLGKVPTIAAAAYLRMAGRPPVLPSSNLSYSENFLYMLDSLGDRSYKPNPRLARAIDVLFILHAEHEMNCSTAAARHLASSGVDVYTALAGATGALYGPLHGGANEAVLRMLNEIGTIDNIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRNLAEEVFSIVGRDPLIEVAVALERAALSDEYFIKRKLYPNVDFYSGLIYRALGFPTEFFPVLFAIPRMAGYLAHWKESLDDPDTKIMRPQQWYTGVWLRHYTPLNKREVSEEADKLGQVAVSNATRRRRAGLIA*

Protein Length: 511

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACATTCCAATTTTCATATTTCCCCTGAACATTTTTTTTCTTCTGCTTGGGATCGGTTCAGAAGTGTATTGGGTACTACTGAGTATCGCCAAGTGTCAATCTTGAGGTGTTTTGGGGAATTGGGTTCGATCCAGTA_-_ATGGCACCTATGGAAGATTTTAGTGAAAAATCGATGGTCCACAGCAGATTAGCAGTACTTTCTGGTCATTTATCGGTTCCTCCGGTGGGTTCTTCCTTAGGTATTGAGACTTCTACAGTGTCTGTAAAGCTCTCGGGGGATCTGAGAGGTTCTCTGACTGTTATTGATAACCGAACGGGGAAGAAAATTGAGGTCGAAGTCAGTGAGGGAGGAACAGTCCGGGCCACTGATTTCAAAAAGTTAACTGTAGGTGGGGATGACAAAGGACTGAAGATTTATGATCCAGGATACTTGAACACTGCTCCTGTCCGTTCATCAATATCTTACATAGATGGAGATGAAGGAATCCTGCGATATAGAGGTTATCCAATTGAGGAGTTAGCTGAGAAGAGCACTTACCTTGAGGTGGCTTACCTCTTAATGTATGGAAATCTTCCTTCTCAGTCCCAGTTAGCAGATTGGGAATTCAATATTTCCCAACATTCAGCAGCGCCCGAGGGAGTATTGGATATCATACAAGCAATGCCTCATGATGCTCATCCAATGGGTATGCTTGTTAGTGCAATAAGTGCACTTTCTACATTTCATCCAGATGCCAATCCAGCATTAAGGGGACAAGATCTTTACAATTCAAAGTCCATTCGAGACAAGCAGATTTCACGTGTCTTGGGAAAGGTACCAACTATAGCAGCGGCTGCATACTTGAGAATGGCGGGGAGACCACCTGTCTTACCTTCCAGTAACCTTTCTTATTCAGAGAATTTTCTATATATGTTGGATTCACTGGGTGACAGATCATATAAACCCAATCCTCGACTAGCAAGAGCCATTGATGTACTTTTCATCTTGCATGCGGAGCATGAAATGAACTGTTCAACAGCTGCTGCACGTCACCTTGCTTCCAGTGGTGTTGATGTCTATACTGCTCTTGCTGGGGCGACTGGTGCGTTGTATGGTCCTTTGCATGGAGGGGCAAATGAGGCGGTTCTCAGAATGCTTAATGAAATTGGCACAATTGATAACATTCCAGAGTTCATTGAGGGTGTGAAAAACAGGAAAAGAAAAATGTCTGGTTTCGGTCATCGAGTATACAAGAATTATGATCCACGTGCTAAGGTTATTCGCAATTTAGCAGAAGAAGTGTTCTCTATTGTTGGACGTGATCCTTTGATTGAGGTGGCTGTGGCATTAGAGAGGGCTGCACTTTCAGATGAGTACTTTATTAAGAGGAAGCTCTACCCAAATGTTGATTTTTATTCAGGCTTAATTTACAGGGCACTGGGTTTCCCGACTGAATTCTTCCCAGTCCTATTTGCCATTCCACGTATGGCTGGTTATCTCGCTCATTGGAAGGAGTCACTTGATGATCCAGATACAAAAATCATGAGGCCACAACAGTGGTACACTGGGGTGTGGCTTCGGCACTATACACCTTTGAACAAGAGGGAAGTTTCAGAGGAGGCTGACAAGCTTGGTCAAGTAGCTGTTTCTAATGCAACAAGAAGACGCCGTGCTGGACTGATTGCATGA___TTATGATTGGTGTTGGTGATGAAATTTGTTGGTAGCTTCTTGTTCCACAATTATTCATTGTGGAAGATCATGAAAATTTCATTAAGCAGCATGGTGTTAATTTATCAGTTTTTACTTGAAAAATGATCAATGCCTACAGATCCTTTTTTCCAGCTCGATATAGAGGTCTGGTTCTTGCATCATTTTCTTTGTGACTATCATATAGTTCATCTACACACTATCAAACAAAGAGTTCGAGCAGTTGAAATTTATGAGACCATGCACTTGCAATCTAGTTTGCCAGTGTGAAACTCTAATAATTTTTCTGGCATTATCATTTATGTAAGAAAGAGCCAACATTATGCTTTTAAACGTGTATACAATGAGTTACCCTTGGCATGTGGTAATTGTGGTCTCTTCAGCGTTGAGTATACGGTTAGCTCTGTACAGTGCTAGCTGTGTGGTATCCTAATCCAACTCTAATAAAACTAGTA

Fln Alignment:

sp_v1.1_unigene16209___MAPMEDFSEKSMVHSRLAVLSGHLSVPPVGSSLGIETSTVSVKLSGDLRGSLTVIDNRTGKKIEVEVSEGGTVRATDFKKLTVGGDDKGLKIYDPGYLNTAPVRSSISYIDGDEGILRYRGYPIEELAEKSTYLEVAYLLMYGNLPSQSQLADWEFNISQHSAAPEGVLDIIQAMPHDAHPMGMLVSAISALSTFHPDANPALRGQDLYNSKSIRDKQISRVLGKVPTIAAAAYLRMAGRPPVLPSSNLSYSENFLYMLDSLGDRSYKPNPRLARAIDVLFILHAEHEMNCSTAAARHLASSGVDVXXXXXXXXXXXXXPLHGGANEAVLRMLNEIGTIDNIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRNLAEEVFSIVGRDPLIEVAVALERAALSDEYFIKRKLYPNVDFYSGLIYRALGFPTEFFPVLFAIPRMAGYLAHWKESLDDPDTKIMRPQQWYTGVWLRHYTPLNKREVSEEADKLGQVAVSNAT
D5AAX0_______________MAPVEGFDEKSMAHSRLAVLSGHLSVPPAGSSLGIETSTVSVKPSGNLRGSLTVIDNRTGRKIEVEVSEGGTVRATDFKKLTIGGDDKGLKLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPIEELAEKSTYLEVAYLLMYGNLPSQSQLADWEFNVSQHSAAPEGVLDIIQAMPHDAHPMGMLVSAISALSTFHPDANPALRGQDLYNSKSIRDKQIARVLGKVPTIAAAAYLRMAGRPPVLPSSNLSYSENFLYMLDSLGDRSYKPNPRLARALDVLFILHAEHEMNCSTAAARHLASSGVDVYTALAGATGALYGPLHGGANEAVLRMLNEIGTVDNIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRNLAEEVFSIVGRDPLIEVAVALERAALSDEYFIKRKLYPNVDFYSGLIYRALGFPTEFFPVLFAIPRMAGYLAHWKESLDDPDTKIMRPQQWYTGVWLRHYTPVNKREASEEADKLGQVAVSNAT

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
457		80		20	0.995493
480		20		80	0.995493
532			12	87	0.992554
601			36	63	1.0
684		11		88	0.923564
843		83		16	0.994512
1039	83		16		0.994512
1051	20			80	0.999996
1144			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain